run chains-before-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-chains-before-opus-1/09a64534-90b8-4842-ba38-5f7f2263b9ed.jsonl

   #  offset    dur    chars     tool       head
   1     3.3    5.3      992     Bash       ls; cat rutile.cif; P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/
   2    11.2    2.7      593     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python; D=$($P -
   3    16.7    8.5     4257     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python; D=$($P -
   4    27.6    1.5     1575     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python; D=$($P -
   5    32.4    3.9     5222     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python; D=$($P -
   6    51.8    2.9      602     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python; $P -c "
   7    67.5    3.4      170     Bash       cat > chain.py <<'EOF'
   8    75.1    0.0    76912     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-before-opus-1/figure.pn
   9    81.3    2.7     1985     Bash       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python -c "
  10    91.6    3.4      189     Bash       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/bin/python - <<'EOF'
  11    97.0    0.0   137104     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-before-opus-1/figure.pn

11 tool calls (9 Bash, 2 Read), 0 errored
12 API calls, 1.7 min wall, 0.27 M cache-read, 23 k cache-write, 6 k output, mean context 25 k
models: claude-opus-5-5 ×12

0 traced interpreter starts, 5 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 27.7 s (0.0%)
    build                                 3      0.1 s [bond_tolerance, probability]
    render_structure                      2      1.1 s [axis_labels, boundary, path, size, view, view=[1, -1, 0]]
