run chains-after-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-chains-after-opus-1/3efe2ef0-6a96-4d63-a101-80fe41982ede.jsonl

   #  offset    dur    chars     tool       head
   1     2.9    2.5     3511     Bash       ls; cat rutile.cif; P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/b
   2     8.6    1.6     1228     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; D=$($P -c
   3    12.7    0.0     6566     Bash       cat /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/lib/python3.12/site
   4    18.4    1.0     1854     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   5    29.6    1.3      630     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   6    34.9    0.0    18732     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-after-opus-1/try_-1.png
   7    35.2    0.0    18048     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-after-opus-1/try_1.png
   8    41.7    3.5      227     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   9    47.7    0.0    25144     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-after-opus-1/try_tilt.p
  10    53.1    3.8      236     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
  11    58.9    0.1    85360     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/chains-after-opus-1/figure.png

11 tool calls (7 Bash, 4 Read), 0 errored
11 API calls, 1.1 min wall, 0.25 M cache-read, 19 k cache-write, 4 k output, mean context 24 k
models: claude-opus-5-5 ×11

0 traced interpreter starts, 18 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 11.6 s (0.0%)
    build                                 8      0.1 s [bond_tolerance, centres, disorder, ligands, max_atoms, probability]
    keep                                  3      0.0 s [complete, complete=True]
    render_structure                      4      1.5 s [path, size, up, view, up=[0, 0, 1], size=400]
    select                                3      0.0 s [element]
