run calcite-fixed-opus-3
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-calcite-fixed-opus-3/ad4f23bf-f379-4be9-b5c1-2583c9ceb675.jsonl

   #  offset    dur    chars     tool       head
   1     1.9    0.0       22     Skill      skill
   2     4.0    0.1     7358     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   3     7.9    1.5      562     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   4    13.4    0.9      444     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   5    19.2    0.8      198     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   6    24.6    1.4      737     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   7    32.5    1.2      264     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
   8    36.4    0.0    67604     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   9    44.0    1.0       52     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  10    47.3    0.0    58224     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  11    47.8    0.0    20556     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
  12    53.0    1.1       28     Bash       cd /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/sc
  13    56.2    0.0   156776     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

13 tool calls (8 Bash, 4 Read, 1 Skill), 0 errored
13 API calls, 1.0 min wall, 0.40 M cache-read, 29 k cache-write, 5 k output, mean context 33 k
models: claude-opus-5-5 ×13

0 traced interpreter starts, 34 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 6.5 s (0.0%)
    build                                12      0.1 s [max_atoms, bond_tolerance, centres, disorder, ligands, probability]
    keep                                  8      0.0 s [complete, complete=True, complete=False]
    render_structure                      6      1.5 s [path, polyhedra, size, view, polyhedra=False, view=auto]
    select                                8      0.0 s [element]
