run calcite-before-sonnet-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-calcite-before-sonnet-1/a6274414-cda7-4760-8767-48dddb4b1c38.jsonl

   #  offset    dur    chars     tool       head
   1     3.2    4.1     3873     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; ca
   2    20.6    0.2      989     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
   3    22.5    0.1     2011     Bash       cat /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/before/lib/python3.12/sit
   4    24.6    3.5     2564     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
   5    31.6    5.3      359     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
   6    31.6    5.3    80184     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1/figure
   7    40.7    4.2       31     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
   8    40.8    4.2   158944     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1/figure
   9    49.9    3.4     4338     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
  10    59.3    4.2       31     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
  11    59.3    4.2    86120     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1/figure
  12    69.7    3.6        2     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
  13    69.7    3.6    53724     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1/figure
  14    79.9    2.7      459     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
  15    90.4    4.3        8     Bash       cd /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1; P=
  16    90.4    4.3    40552     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/calcite-before-sonnet-1/figure

16 tool calls (11 Bash, 5 Read), 0 errored
12 API calls, 1.6 min wall, 0.28 M cache-read, 23 k cache-write, 6 k output, mean context 25 k
models: claude-sonnet-5-5 ×12

0 traced interpreter starts, 12 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 29.7 s (0.0%)
    build                                 7      0.2 s [bond_tolerance, probability]
    render_structure                      5      3.7 s [path, polyhedra, view, polyhedra=False, size, hidden]
