run calcite-before-opus-2
transcript /Users/yue/.claude/projects/-private-tmp-claude-501--Users-yue-Code-rietx-0433c291-1037-42b9-8cb7-5377547150b7-scratchpad-1504-root-work-calcite-before-opus-2/8968aaaa-d36c-467b-b7f3-39d310ffab25.jsonl

   #  offset    dur    chars     tool       head
   1     2.2    0.0       22     Skill      skill
   2     2.2    0.1      461     Bash       ls; cat calcite.cif | head -60
   3     4.0    0.0     2011     Bash       cat .claude/skills/rietx/references/api-figure.md
   4     6.5    1.0     2170     Bash       P=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scr
   5    10.4    1.6      107     Bash       P=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scr
   6    14.6    0.0   180660     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat
   7    21.1    1.4     2527     Bash       P=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scr
   8    28.5    1.0       61     Bash       P=/private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scr
   9    40.8    1.8       43     Bash       cat > draw.py <<'EOF'
  10    44.7    0.0    99144     Read       /private/tmp/claude-501/-Users-yue-Code-rietx/0433c291-1037-42b9-8cb7-5377547150b7/scrat

10 tool calls (7 Bash, 2 Read, 1 Skill), 0 errored
10 API calls, 0.8 min wall, 0.29 M cache-read, 27 k cache-write, 4 k output, mean context 31 k
models: claude-opus-5-5 ×10

0 traced interpreter starts, 6 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 6.0 s (0.0%)
    build                                 4      0.1 s [bond_tolerance, probability]
    render_structure                      2      0.9 s [path, polyhedra, polyhedra=False, hidden, hidden=['Ca']]
