run gypsum-after-opus-1
transcript /Users/yue/.claude/projects/-Users-yue-rietx-agent-runs-2026-10-01-wp1504-figure-work-gypsum-after-opus-1/cfb1694d-8a61-4dae-9177-7134fa435a89.jsonl

   #  offset    dur    chars     tool       head
   1     3.7    0.7     1280     Bash       ls -la; cat gypsum.cif; P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/aft
   2     7.4    0.6      212     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; D=$($P -c
   3    10.6    0.7      810     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; D=$($P -c
   4    13.2    0.1     9173     Bash       cat .claude/skills/rietx/references/api-figure.md; grep -n -i "figure\|structure" .claud
   5    19.7    0.7     1548     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   6    30.8    1.1     1367     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   7    35.5    0.0    47720     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-after-opus-1/try_c.png
   8    42.3    0.9       40     Bash       P=/Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/venvs/after/bin/python; $P - <<'E
   9    45.2    0.0   159144     Read       /Users/yue/rietx-agent-runs/2026-10-01-wp1504-figure/work/gypsum-after-opus-1/figure.png

9 tool calls (7 Bash, 2 Read), 0 errored
10 API calls, 0.9 min wall, 0.21 M cache-read, 17 k cache-write, 4 k output, mean context 23 k
models: claude-opus-5-5 ×10

0 traced interpreter starts, 12 traced calls
refinement 0.0 s in 0 fit calls (0.0% of wall)
per-process floor 0.0 s of 3.8 s (0.0%)
    build                                 5      0.0 s [max_atoms, bond_tolerance, centres, disorder, ligands, probability]
    keep                                  2      0.0 s [complete, complete=True]
    periodicity                           1      0.0 s
    render_structure                      4      0.5 s [path, size, view, up, up=None, size=400]
