LICENSE
pyproject.toml
setup.py
TractSeg.egg-info/PKG-INFO
TractSeg.egg-info/SOURCES.txt
TractSeg.egg-info/dependency_links.txt
TractSeg.egg-info/not-zip-safe
TractSeg.egg-info/requires.txt
TractSeg.egg-info/top_level.txt
bin/ExpRunner
bin/Tracking
bin/TractSeg
bin/Tractometry
bin/calc_FA
bin/download_all_pretrained_weights
bin/flip_peaks
bin/get_image_spacing
bin/plot_tractometry_results
bin/remove_negative_values
bin/rotate_bvecs
tests/__init__.py
tests/test_end_to_end.py
tests/test_functions.py
tractseg/__init__.py
tractseg/python_api.py
tractseg/data/DLDABG_standalone.py
tractseg/data/__init__.py
tractseg/data/check_data.py
tractseg/data/custom_transformations.py
tractseg/data/data_loader_inference.py
tractseg/data/data_loader_precomputed.py
tractseg/data/data_loader_training.py
tractseg/data/data_loader_training_3D.py
tractseg/data/dataset_specific_utils.py
tractseg/data/preprocessing.py
tractseg/data/spatial_transform_custom.py
tractseg/data/spatial_transform_peaks.py
tractseg/data/subjects.py
tractseg/experiments/__init__.py
tractseg/experiments/base.py
tractseg/experiments/dm_reg.py
tractseg/experiments/dm_reg_lowres.py
tractseg/experiments/endings_seg.py
tractseg/experiments/endings_seg_lowres.py
tractseg/experiments/peak_reg.py
tractseg/experiments/peak_reg_angle.py
tractseg/experiments/peak_reg_lowres.py
tractseg/experiments/tract_seg.py
tractseg/experiments/tract_seg_lowres.py
tractseg/experiments/base_legacy/__init__.py
tractseg/experiments/base_legacy/dm_reg_legacy.py
tractseg/experiments/base_legacy/dm_reg_lowres_legacy.py
tractseg/experiments/base_legacy/endings_seg_legacy.py
tractseg/experiments/base_legacy/endings_seg_lowres_legacy.py
tractseg/experiments/base_legacy/peak_reg_legacy.py
tractseg/experiments/base_legacy/peak_reg_lowres_legacy.py
tractseg/experiments/base_legacy/tract_seg_legacy.py
tractseg/experiments/base_legacy/tract_seg_lowres_legacy.py
tractseg/experiments/pretrained_models/DmReg.py
tractseg/experiments/pretrained_models/DmReg_All_BXTensAg_aPTX_platLR20_noMiss.py
tractseg/experiments/pretrained_models/DmReg_All_xtract_PeakRot4.py
tractseg/experiments/pretrained_models/EndingsSeg_PeakRot4.py
tractseg/experiments/pretrained_models/Peaks_AngL.py
tractseg/experiments/pretrained_models/TractSeg72_888.py
tractseg/experiments/pretrained_models/TractSeg_All_BXTensAg_aPTX_platLR20.py
tractseg/experiments/pretrained_models/TractSeg_All_xtract_PeakRot4.py
tractseg/experiments/pretrained_models/TractSeg_BXTensAg.py
tractseg/experiments/pretrained_models/TractSeg_HR_3D_DAug.py
tractseg/experiments/pretrained_models/TractSeg_PeakRot4.py
tractseg/experiments/pretrained_models/TractSeg_T1_125mm_DAugAll.py
tractseg/experiments/pretrained_models/TractSeg_T1_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/__init__.py
tractseg/experiments/pretrained_models/old_1/EndingsSeg_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/old_1/Peaks20_12g90g270g_125mm.py
tractseg/experiments/pretrained_models/old_1/Peaks20_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_1/Peaks20_270g_125mm.py
tractseg/experiments/pretrained_models/old_1/Peaks_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_1/TractSeg_12g90g270g_125mm_DAugAll_Dropout.py
tractseg/experiments/pretrained_models/old_1/__init__.py
tractseg/experiments/pretrained_models/old_2/DmReg_12g90g270g_125mm_DAugAll.py
tractseg/experiments/pretrained_models/old_2/EndingsSeg_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_2/TractSeg_12g90g270g_125mm_DS_DAugAll.py
tractseg/experiments/pretrained_models/old_2/TractSeg_12g90g270g_125mm_DS_DAugAll_Dropout.py
tractseg/experiments/pretrained_models/old_2/__init__.py
tractseg/libs/AFQ_MultiCompCorrection.py
tractseg/libs/__init__.py
tractseg/libs/create_endpoints_mask_with_clustering.py
tractseg/libs/data_utils.py
tractseg/libs/direction_merger.py
tractseg/libs/exp_utils.py
tractseg/libs/fiber_utils.py
tractseg/libs/img_utils.py
tractseg/libs/metric_utils.py
tractseg/libs/peak_utils.py
tractseg/libs/plot_utils.py
tractseg/libs/preprocessing.py
tractseg/libs/pytorch_einsum.py
tractseg/libs/pytorch_utils.py
tractseg/libs/system_config.py
tractseg/libs/tracking.py
tractseg/libs/tractometry.py
tractseg/libs/tractseg_prob_tracking.c
tractseg/libs/tractseg_prob_tracking_python.py
tractseg/libs/trainer.py
tractseg/libs/utils.py
tractseg/libs/vtk_utils.py
tractseg/models/__init__.py
tractseg/models/base_model.py
tractseg/models/unet3d_pytorch_deepsup_sm.py
tractseg/models/unet_pytorch.py
tractseg/models/unet_pytorch_deepsup.py
tractseg/models/unet_pytorch_deepsup_test.py
tractseg/resources/MNI_FA_template.nii.gz
tractseg/resources/__init__.py
tractseg/resources/random_forest_peak_orientation_detection.pkl