Metadata-Version: 2.1
Name: alphabetsoup
Version: 0.2
Summary: alphabetsoup -- fixes problems in protein FASTA files.
Home-page: http://github.com/ncgr/alphabetsoup
Author: Joel Berendzen
Author-email: joelb@ncgr.org
Maintainer: Joel Berendzen
Maintainer-email: joelb@ncgr.org
License: BSD 3-Clause License
Description: .. epigraph:: al·pha·bet soup
                      /ˈalfəˌbet so͞op/Submit
                      noun INFORMAL
                      incomprehensible or confusing language, typically containing many abbreviations or symbols.
        
        
        alphabetsoup fixes problems with protein FASTA files:
        +--------------------------+------------------------+
        | Problem                  | Fix                    |
        +--------------------------+------------------------+
        | Unknown character        | Replaces with 'X'      |
        +--------------------------+------------------------+
        | Stop/ambigous at ends    | Trims                  |
        +--------------------------+------------------------+
        | Stop/ambiguous in middle | Optionally fragments   |
        +--------------------------+------------------------+
        | Too short                | Deletes record         |
        +--------------------------+------------------------+
        
        
        +-------------------+------------+------------+
        | Latest Release    | |pypi|     | |Soup|     |
        +-------------------+------------+            +
        | GitHub            | |repo|     |            |
        +-------------------+------------+            +
        | License           | |license|  |            |
        +-------------------+------------+            +
        | Documentation     | |rtd|      |            |
        +-------------------+------------+            +
        | Travis Build      | |travis|   |            |
        +-------------------+------------+            +
        | Coverage          | |coverage| |            |
        +-------------------+------------+            +
        | Pythonicity       | |landscape||            |
        +-------------------+------------+            +
        | Code Grade        | |codacy|   |            |
        +-------------------+------------+            +
        | Dependencies      | |pyup|     |            |
        +-------------------+------------+            +
        | Issues            | |issues|   |            |
        +-------------------+------------+            +
        | Kanban            | |ZenHub|   |            |
        +-------------------+------------+------------+
        
        
        .. |Soup| image:: docs/alphabetsoup.webp
             :target: https://en.wikipedia.org/wiki/Alphabet_soup_(linguistics)
             :alt: Alphabet Soup Definition
        
        .. |pypi| image:: https://img.shields.io/pypi/v/alphabetsoup.svg
            :target: https://pypi.python.org/pypi/alphabetsoup
            :alt: Python package
        
        .. |repo| image:: https://img.shields.io/github/commits-since/ncgr/alphabetsoup/0.01.svg
            :target: https://github.com/ncgr/alphabetsoup
            :alt: GitHub repository
        
        .. |license| image:: https://img.shields.io/badge/License-BSD%203--Clause-blue.svg
            :target: https://github.com/ncgr/alphabetsoup/blob/master/LICENSE.txt
            :alt: License terms
        
        .. |rtd| image:: https://readthedocs.org/projects/alphabetsoup/badge/?version=latest
            :target: http://alphabetsoup.readthedocs.io/en/latest/?badge=latest
            :alt: Documentation Server
        
        .. |travis| image:: https://img.shields.io/travis/ncgr/alphabetsoup.svg
            :target:  https://travis-ci.org/ncgr/alphabetsoup
            :alt: Travis CI
        
        .. |landscape| image:: https://landscape.io/github/ncgr/alphabetsoup/master/landscape.svg?style=flat
            :target: https://landscape.io/github/ncgr/alphabetsoup
            :alt: landscape.io status
        
        .. |codacy| image:: https://api.codacy.com/project/badge/Grade/2ebc65ca90f74dc7a9238c202f327981
            :target: https://www.codacy.com/app/joelb123/alphabetsoup?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=LegumeFederation/lorax&amp;utm_campaign=Badge_Grade
            :alt: Codacy.io grade
        
        .. |coverage| image:: https://codecov.io/gh/ncgr/alphabetsoup/branch/master/graph/badge.svg
            :target: https://codecov.io/gh/ncgr/alphabetsoup
            :alt: Codecov.io test coverage
        
        .. |issues| image:: https://img.shields.io/github/issues/LegumeFederation/lorax.svg
            :target:  https://github.com/ncgr/alphabetsoup/issues
            :alt: Issues reported
        
        .. |requires| image:: https://requires.io/github/ncgr/alphabetsoup/requirements.svg?branch=master
             :target: https://requires.io/github/ncgr/alphabetsoup/requirements/?branch=master
             :alt: Requirements Status
        
        .. |pyup| image:: https://pyup.io/repos/github/ncgr/alphabetsoup/shield.svg
             :target: https://pyup.io/repos/github/ncgr/alphabetsoup/
             :alt: pyup.io dependencies
        
        .. |ZenHub| image:: https://raw.githubusercontent.com/ZenHubIO/support/master/zenhub-badge.png
            :target: https://zenhub.com
            :alt: Powered by ZenHub
        
        
        
Keywords: science,biology,bioinformatics,genomics,genes
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Framework :: Flask
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: POSIX :: BSD
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: C
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Provides-Extra: tests
Provides-Extra: docs
Provides-Extra: all
