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AUTHORS.md
CHANGELOG.md
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
README.md
codecov.yml
commitlint.config.js
package.json
pyproject.toml
setup.py
tox.ini
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axon_projection/__init__.py
axon_projection/axonal_projections.py
axon_projection/check_atlas.py
axon_projection/choose_hierarchy_level.py
axon_projection/classify_axons.py
axon_projection/cli.py
axon_projection/compute_morphometrics.py
axon_projection/config_a_p.cfg
axon_projection/count_tufts.py
axon_projection/plot_results.py
axon_projection/plot_utils.py
axon_projection/prod-forge-nexus.yml
axon_projection/query_atlas.py
axon_projection/run.py
axon_projection/sample_axon.py
axon_projection/separate_tufts.py
axon_projection/version.py
axon_projection/visualize_connections.py
axon_projection.egg-info/PKG-INFO
axon_projection.egg-info/SOURCES.txt
axon_projection.egg-info/dependency_links.txt
axon_projection.egg-info/entry_points.txt
axon_projection.egg-info/requires.txt
axon_projection.egg-info/top_level.txt
axon_projection/figures_scripts/README.md
axon_projection/figures_scripts/acronyms_to_names.py
axon_projection/figures_scripts/build_connectome.py
axon_projection/figures_scripts/compute_scores.py
axon_projection/figures_scripts/plot_feat_cmp.py
axon_projection/figures_scripts/plot_flatmap_h5/background.png
axon_projection/figures_scripts/plot_flatmap_h5/flatmap_util.py
axon_projection/figures_scripts/plot_flatmap_h5/flatplot.py
axon_projection/figures_scripts/plot_flatmap_h5/parse_cmap.py
axon_projection/figures_scripts/plot_flatmap_h5/plot_multiple_morphs.py
axon_projection/validation/config_synth_favored_new_atlas.cfg
axon_projection/validation/circuit-build/add_axons.py
axon_projection/validation/circuit-build/axon_synth.sh
axon_projection/validation/circuit-build/change_morph_extension.py
axon_projection/validation/circuit-build/post_proc_axon_synth.sh
axon_projection/validation/circuit-build/prepare_axon_synth.sh
axon_projection/validation/circuit-build/lite_template/complete_circuit.sh
axon_projection/validation/circuit-build/lite_template/inputs.sh
axon_projection/validation/circuit-build/lite_template/post_proc_axons.sh
axon_projection/validation/circuit-build/lite_template/prepare_axons.sh
axon_projection/validation/circuit-build/lite_template/synth_axons.sh
axon_projection/validation/circuit-build/lite_template/synth_cells.sh
axon_projection/validation/circuit-build/lite_template/bioname/MANIFEST.yaml
axon_projection/validation/circuit-build/lite_template/bioname/builderConnectivityRecipeAllPathways.xml
axon_projection/validation/circuit-build/lite_template/bioname/builderRecipeAllPathways.xml
axon_projection/validation/circuit-build/lite_template/bioname/cell_composition.yaml
axon_projection/validation/circuit-build/lite_template/bioname/cluster.yaml
axon_projection/validation/circuit-build/lite_template/bioname/mtype_taxonomy.tsv
axon_projection/validation/circuit-build/lite_template/bioname/neurondb-axon.dat
axon_projection/validation/circuit-build/lite_template/bioname/placement_rules.xml
axon_projection/validation/circuit-build/lite_template/bioname/region_structure.yaml
axon_projection/validation/circuit-build/lite_template/bioname/s2f.yaml
axon_projection/validation/circuit-build/lite_template/bioname/targets.yaml
axon_projection/validation/circuit-build/lite_template/bioname/tmd_distributions.json
axon_projection/validation/circuit-build/lite_template/bioname/tmd_parameters.json
docs/APWorkflow.png
docs/Makefile
docs/graph_example.png
docs/source/api_ref.rst
docs/source/changelog.rst
docs/source/cli.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
example/config_clustering_example.cfg
example/config_synthesis_example.cfg
example/create_collection.py
example/run_clustering_example.sh
example/run_synthesis_example.sh
example/data/morphologies/121750.swc
example/data/morphologies/121751.swc
example/data/morphologies/121752.swc
example/data/morphologies/121753.swc
example/data/morphologies/121754.swc
example/data/morphologies/121755.swc
example/data/morphologies/121756.swc
example/data/morphologies/121757.swc
example/data/morphologies/121758.swc
example/data/morphologies/121759.swc
example/data/morphologies/121761.swc
example/data/morphologies/121764.swc
example/data/morphologies/121767.swc
example/data/morphologies/121936.swc
example/data/morphologies/121959.swc
example/data/morphologies/121968.swc
example/data/morphologies/121987.swc
example/data/morphologies/85013.swc
example/data/morphologies/85014.swc
example/data/morphologies/85015.swc
example/data/morphologies/85021.swc
example/data/morphologies/85024.swc
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example/data/morphologies/85026.swc
example/data/morphologies/85027.swc
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example/data/morphologies/85029.swc
example/data/morphologies/85032.swc
example/data/morphologies/85033.swc
example/data/morphologies_for_synthesis/121750.swc
example/data/morphologies_for_synthesis/121751.swc
example/data/morphologies_for_synthesis/121752.swc
example/data/morphologies_for_synthesis/121753.swc
example/data/morphologies_for_synthesis/121754.swc
example/data/morphologies_for_synthesis/121755.swc
example/data/morphologies_for_synthesis/121757.swc
example/data/morphologies_for_synthesis/121759.swc
example/data/morphologies_for_synthesis/121764.swc
example/data/morphologies_for_synthesis/121767.swc
example/data/morphologies_for_synthesis/121936.swc
example/data/morphologies_for_synthesis/121959.swc
example/data/morphologies_for_synthesis/121968.swc
example/data/morphologies_for_synthesis/121987.swc
example/data/morphologies_for_synthesis/85013.swc
example/data/morphologies_for_synthesis/85014.swc
example/data/morphologies_for_synthesis/85015.swc
example/data/morphologies_for_synthesis/85021.swc
example/data/morphologies_for_synthesis/85024.swc
example/data/morphologies_for_synthesis/85025.swc
example/data/morphologies_for_synthesis/85026.swc
example/data/morphologies_for_synthesis/85027.swc
example/data/morphologies_for_synthesis/85028.swc
example/data/morphologies_for_synthesis/85029.swc
example/data/morphologies_for_synthesis/85032.swc
example/data/morphologies_for_synthesis/85033.swc
extra/spack/var/spack/repos/builtin/packages/py-axon-projection/package.py
tests/__init__.py
tests/conftest.py
tests/test_hierarchy.py
tests/data/mba_hierarchy.json