matplotlib
sphinx>=1.4
cutadapt>=1.10
pybedtools
numpydoc
pysam
numpy
pandas

[test]
check-manifest
pylint>=1.6.4
pycodestyle>=2.1.0
pydocstyle>=1.0.0
pytest-cov
readme_renderer
coverage>=4.2

[package]
twine
wheel

[docs]
docutils
releases
sphinx_rtd_theme