Metadata-Version: 2.1
Name: cxsystem2
Version: 0.0a32
Summary: A cerebral cortex simulation framework
Home-page: https://github.com/VisualNeuroscience-UH/CxSystem2
Author: Vafa Andalibi, Henri Hokkanen, Simo Vanni
Author-email: vafa.andalibi@gmail.com
License: GPL v3.0
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Win32 (MS Windows)
Classifier: Environment :: MacOS X
Classifier: Environment :: X11 Applications
Classifier: Environment :: Console
Classifier: Intended Audience :: Information Technology
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows :: Windows 10
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Utilities
Description-Content-Type: text/markdown
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# CxSystem, A Flexible Cortical Simulation Framework

CxSystem is a cerebral cortex simulation framework, which operates on personal computers. We have tested the simulation software with a simplified version of a comprehensive cortical microcircuit model [1], which is available as configuration file. 

The CxSystem aims at easy testing and buildup of diverse models at single cell resolution.  Implemented on the top of the Python-based [Brian2 simulator](https://github.com/brian-team/brian2), CxSystem supports the main goal of Brian, i.e. minimizing development time, by providing the user with a simplified interface.

The preliminary version of this software has been developed at Aalto University 2012-2015 [2], and the full version at the University of Helsinki 2013-2017. The software is distributed under the terms of the GNU General Public License, Copyright 2017 Vafa Andalibi, Henri Hokkanen and Simo Vanni.

To access the documentation of the CxSystem, please check out the [readthedocs page](http://cxsystem.readthedocs.io/en/master/) of the project.
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<sub>[1] Markram, H., Muller, E., Ramaswamy, S., Reimann, M. W., Abdellah, M., Sanchez, C. A., â€¦ SchÃ¼rmann, F. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell, 163(2), 456â€“492. http://doi.org/10.1016/j.cell.2015.09.029</sub>

<sub>[2]Heikkinen, H., Sharifian, F., VigÃ¡rio, R., & Vanni, S. (2015). Feedback to distal dendrites links fMRI signals to neural receptive fields in a spiking network model of the visual cortex. Journal of Neurophysiology, 114(1), 57â€“69. http://doi.org/10.1152/jn.00169.2015</sub>

# Documentation Status

[![Documentation Status](https://readthedocs.org/projects/cxsystem/badge/?version=master)](http://cxsystem.readthedocs.io/en/master/?badge=master)



