Metadata-Version: 2.1
Name: bmmltools
Version: 0.2.0
Summary: BioMaterial Machine Learning tools (bmmltools), package to do machine learning with large binary 3d images
Home-page: https://gitlab.mpikg.mpg.de/curcuraci/bmmltools
Author: Luca Curcuraci
Author-email: Luca.Curcuraci@mpikg.mpg.de
Project-URL: Bug tracker, https://gitlab.mpikg.mpg.de/curcuraci/bmmltools/-/issues/new
Project-URL: Documentation, https://bmmltools.readthedocs.io/en/latest/
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: dill (==0.3.4)
Requires-Dist: GPyOpt (==1.2.6)
Requires-Dist: h5py (==2.10.0)
Requires-Dist: imageio (==2.9.0)
Requires-Dist: joblib
Requires-Dist: mkl-fft (==1.3.1)
Requires-Dist: numpy
Requires-Dist: pandas (==1.3.2)
Requires-Dist: plotly (==5.10.0)
Requires-Dist: pyshtools (==4.9.1)
Requires-Dist: pyvis (==0.2.1)
Requires-Dist: scikit-image (==0.18.1)
Requires-Dist: scikit-learn (==1.1.2)
Requires-Dist: scipy
Requires-Dist: seaborn (==0.11.2)
Requires-Dist: streamlit (==1.12.0)
Requires-Dist: stvis (==0.0.2)
Requires-Dist: tqdm (==4.62.1)
Requires-Dist: matplotlib (==3.4.2)

# bmmltools


### Installation

Temporary installation path in the anaconda propt.

```
> (base) conda create -n new_env python=3.8
> (base) conda activate new_env
> (new_env) conda install pytables
> (new_env) cd [PATH TO bmmltools FOLDER]
> (new_env) [PATH TO bmmltools FOLDER] pip install -r requirements.txt
> (new_env) [PATH TO bmmltools FOLDER] python setup.py install
```

To run the bmmlboard, write in the anaconda prompt

```
> (base) conda activate new_env
> (new_env) python -m bmmltools.run_bmmlboard
```

assuming that bmmltools is installed in the "new_env" environment.

## Example usage

See example folder
