numpy
pandas
h5py
xxhash
biopython
tqdm
regex
pyarrow
pyahocorasick
pyteomics
pyyaml
lxml
certifi

[development]
jupyter
bump-my-version
ipykernel
pre-commit==3.7.0
nbmake==1.5.3
matplotlib
pytest
anndata==0.10.8
mudata==0.2.4
autodocsumm
myst_parser
sphinx
nbsphinx
jinja2
contextfilter
furo

[full]
numba
rdkit

[full-stable]
numba==0.60.0
rdkit==2024.3.3

[hdf]
tables

[hdf-stable]
tables==3.9.2

[numba]
numba

[numba-stable]
numba==0.60.0

[rdkit]
rdkit

[rdkit-stable]
rdkit==2024.3.3

[stable]
numpy<2.0
pandas==2.2.3
h5py==3.12.1
xxhash==3.5.0
biopython==1.84
tqdm==4.67.0
regex==2024.11.6
pyarrow==19.0.1
pyahocorasick==2.1.0
pyteomics==4.7.5
pyyaml==6.0.2
lxml==5.3.0
certifi==2025.11.12

[tests]
pre-commit==3.7.0
nbmake==1.5.3
matplotlib
pytest
anndata==0.10.8
mudata==0.2.4
