// Created by libAntimony v2.13.0
function Function_for_x_Formation(A, x, epsilon, z)
  A*(1 - x)/(epsilon + z);
end

Function_for_x_Formation is "Function_for_x_Formation"

function Function_for_y_Formation(x)
  x*x;
end

Function_for_y_Formation is "Function_for_y_Formation"

function Function_for_z_Consumption(C, z, x, epsilon)
  C*z*(1 - x)/(epsilon + z);
end

Function_for_z_Consumption is "Function_for_z_Consumption"

function Function_for_x_Consumption(B, z, x, delta)
  B*z*x/(delta + x);
end

Function_for_x_Consumption is "Function_for_x_Consumption"

function Function_for_z_Formation(y)
  y;
end

Function_for_z_Formation is "Function_for_z_Formation"


model *GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B()

  // Compartments and Species:
  compartment compartment_;
  species x in compartment_, y in compartment_, z in compartment_;

  // Reactions:
  x_Formation:  => x; compartment_*Function_for_x_Formation(A, x, epsilon, z);
  x_Consumption: x => ; compartment_*Function_for_x_Consumption(B, z, x, delta);
  y_Formation:  => y; compartment_*Function_for_y_Formation(x);
  y_Consumption: y => ; compartment_*y_Consumption_k1*y;
  z_Formation:  => z; compartment_*Function_for_z_Formation(y);
  z_Consumption: z => ; compartment_*Function_for_z_Consumption(C, z, x, epsilon);

  // Species initializations:
  x = 0;
  y = 0;
  z = 0;

  // Compartment initializations:
  compartment_ = 1;

  // Variable initializations:
  A = 0.007;
  B = 954.5;
  C = 0.035;
  epsilon = 2e-05;
  delta = 0.029;
  y_Consumption_k1 = 1;

  // Other declarations:
  const compartment_, A, B, C, epsilon, delta;

  // Unit definitions:
  unit substance = item;

  // Display Names:
  compartment_ is "compartment";

  // SBO terms:
  y_Formation.sboTerm = 183
  z_Formation.sboTerm = 184

  // CV terms:
  compartment_ hypernym "http://identifiers.org/cl/CL:0000000"
  x identity "http://identifiers.org/ncit/C17380"
  y encodement "http://identifiers.org/ncit/C104199"
  z identity "http://identifiers.org/ncit/C104199"
  x_Formation hypernym "http://identifiers.org/sbo/SBO:0000180"
  x_Consumption propertyBearer "http://identifiers.org/sbo/SBO:0000177"
  y_Formation identity "http://identifiers.org/sbo/SBO:0000183"
  y_Consumption hypernym "http://identifiers.org/sbo/SBO:0000179"
  z_Formation identity "http://identifiers.org/sbo/SBO:0000184"
  z_Consumption hypernym "http://identifiers.org/sbo/SBO:0000177"
end

GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B is "GonzalezMiranda2013 - The effect of circadian oscillations on biochemical cell signaling by NF-κB"

GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B description "http://identifiers.org/pubmed/23820037"
GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B model_entity_is "http://identifiers.org/biomodels.db/MODEL1912160002",
                                                                                                                  "http://identifiers.org/biomodels.db/BIOMD0000000893"
GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B property "http://identifiers.org/ncit/C16348"
GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B property "http://identifiers.org/mamo/MAMO_0000046"
GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B property "http://identifiers.org/efo/0004354"
GonzalezMiranda2013___The_effect_of_circadian_oscillations_on_biochemical_cell_signaling_by_NF__B property "http://identifiers.org/ncit/C17132"
