// Created by libAntimony v2.13.0
function Function_for_Susceptible_Logistic_Growth(r, S, N, K)
  r*S*(1 - N/K);
end

Function_for_Susceptible_Logistic_Growth is "Function_for_Susceptible_Logistic_Growth"

function Function_for_Chronic_Logistic_Growth(r_tilde, C, N, K)
  r_tilde*C*(1 - N/K);
end

Function_for_Chronic_Logistic_Growth is "Function_for_Chronic_Logistic_Growth"

function Function_for_Virus_Chronic_Release_From_Chronic_Infected(alpha, C)
  alpha*C;
end

Function_for_Virus_Chronic_Release_From_Chronic_Infected is "Function_for_Virus_Chronic_Release_From_Chronic_Infected"


model *Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic()

  // Compartments and Species:
  compartment compartment_;
  species S in compartment_, C in compartment_, V_C in compartment_;

  // Assignment Rules:
  d := 1/24;
  phi := 0.55*10^-9.5;
  d_tilde := 1/20;
  N := S + C;

  // Reactions:
  Susceptible_Logistic_Growth:  => S; compartment_*Function_for_Susceptible_Logistic_Growth(r, S, N, K);
  Susceptible_Absorption_Virus: S + V_C => C; compartment_*phi_tilde*S*V_C;
  Susceptible_Death: S => ; compartment_*d*S;
  Chronic_Infected_Death: C => ; compartment_*d_tilde*C;
  Chronic_Infected_Logistic_Growth:  => C; compartment_*Function_for_Chronic_Logistic_Growth(r_tilde, C, N, K);
  Virus_Chronic_Release_From_Chronic_Infected:  => V_C; compartment_*Function_for_Virus_Chronic_Release_From_Chronic_Infected(alpha, C);
  Virus_Chronic_Decay: V_C => ; compartment_*mu*V_C;

  // Species initializations:
  S = 830000000;
  C = 0;
  V_C = 0.04*S;

  // Compartment initializations:
  compartment_ = 1;

  // Variable initializations:
  r = 0.339;
  K = 894700000;
  beta = 20;
  eta = 1.5;
  mu = 0.0866;
  r_tilde = 0.2;
  phi_tilde = 5e-12;
  alpha = 0.1;

  // Other declarations:
  var d, phi, d_tilde, N;
  const compartment_, r, K, beta, eta, mu, r_tilde, phi_tilde, alpha;

  // Unit definitions:
  unit volume = 1e-3 litre;
  unit time_unit = 3600 second;
  unit substance = item;

  // Display Names:
  time_unit is "time";
  compartment_ is "compartment";

  // CV terms:
  compartment_ hypernym "http://identifiers.org/ncit/C16551"
  S version "http://identifiers.org/ncit/C14187"
  C property "http://identifiers.org/ncit/C14283"
  C property "http://identifiers.org/ncit/C14141"
  V_C identity "http://identifiers.org/ncit/C14368"
  Susceptible_Logistic_Growth identity "http://identifiers.org/ncit/C18081"
  Susceptible_Absorption_Virus identity "http://identifiers.org/go/GO:0046718"
  Susceptible_Death identity "http://identifiers.org/go/GO:0008219"
  Chronic_Infected_Death identity "http://identifiers.org/go/GO:0008219"
  Chronic_Infected_Logistic_Growth identity "http://identifiers.org/go/GO:0044659"
  Virus_Chronic_Release_From_Chronic_Infected identity "http://identifiers.org/go/GO:0019076"
  Virus_Chronic_Decay hypernym "http://identifiers.org/sbo/SBO:0000179"
end

Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic is "Gulbudak2019.2 - Heterogeneous viral strategies promote coexistence in virus-microbe systems (Chronic)"

Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic description "http://identifiers.org/pubmed/30389532"
Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic model_entity_is "http://identifiers.org/biomodels.db/MODEL1911100004",
                                                                                                                      "http://identifiers.org/biomodels.db/BIOMD0000000846"
Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic property "http://identifiers.org/go/GO:0019089"
Gulbudak2019_2___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems__Chronic property "http://identifiers.org/mamo/MAMO_0000046"
