// Created by libAntimony v2.13.0
function Function_for_Virus_Lytic_Release_From_Infected(beta, eta, I)
  beta*eta*I;
end

Function_for_Virus_Lytic_Release_From_Infected is "Function_for_Virus_Lytic_Release_From_Infected"

function Function_for_Susceptible_Logistic_Growth(r, S, N, K)
  r*S*(1 - N/K);
end

Function_for_Susceptible_Logistic_Growth is "Function_for_Susceptible_Logistic_Growth"


model *Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems()

  // Compartments and Species:
  compartment compartment_;
  species S in compartment_, I in compartment_, V_L in compartment_;

  // Assignment Rules:
  d := 1/24;
  phi := 0.55*10^-9.5;
  N := S + I;

  // Reactions:
  Susceptible_Logistic_Growth:  => S; compartment_*Function_for_Susceptible_Logistic_Growth(r, S, N, K);
  Susceptible_Absorption_Virus: S + V_L => I; compartment_*phi*S*V_L;
  Susceptible_Death: S => ; compartment_*d*S;
  Infected_Death: I => ; compartment_*d*I;
  Infected_Lysis: I => ; compartment_*eta*I;
  Virus_Lytic_Release_From_Infected:  => V_L; compartment_*Function_for_Virus_Lytic_Release_From_Infected(beta, eta, I);
  Virus_Lytic_Decay: V_L => ; compartment_*mu*V_L;

  // Species initializations:
  S = 830000000;
  I = 0;
  V_L = 33200000;

  // Compartment initializations:
  compartment_ = 1;

  // Variable initializations:
  r = 0.339;
  K = 894700000;
  beta = 20;
  eta = 1.5;
  mu = 0.0866;
  r_tilde = 0.2;
  phi_tilde = 2e-11;
  alpha = 0.1;
  d_tilde = 0.05;

  // Other declarations:
  var d, phi, N;
  const compartment_, r, K, beta, eta, mu, r_tilde, phi_tilde, alpha, d_tilde;

  // Unit definitions:
  unit volume = 1e-3 litre;
  unit time_unit = 3600 second;
  unit substance = item;

  // Display Names:
  time_unit is "time";
  compartment_ is "compartment";

  // CV terms:
  compartment_ hypernym "http://identifiers.org/ncit/C16551"
  S version "http://identifiers.org/ncit/C14187"
  I hypernym "http://identifiers.org/bto/BTO:0000152"
  V_L identity "http://identifiers.org/ncit/C14368"
  Susceptible_Logistic_Growth identity "http://identifiers.org/ncit/C18081"
  Susceptible_Absorption_Virus identity "http://identifiers.org/go/GO:0046718"
  Susceptible_Death identity "http://identifiers.org/go/GO:0008219"
  Infected_Death identity "http://identifiers.org/go/GO:0008219"
  Infected_Lysis identity "http://identifiers.org/go/GO:0044659"
  Virus_Lytic_Release_From_Infected identity "http://identifiers.org/go/GO:0019076"
  Virus_Lytic_Decay hypernym "http://identifiers.org/sbo/SBO:0000179"
end

Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems is "Gulbudak2019 - Heterogeneous viral strategies promote coexistence in virus-microbe systems"

Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems description "http://identifiers.org/pubmed/30389532"
Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems model_entity_is "http://identifiers.org/biomodels.db/MODEL1911100003",
                                                                                                           "http://identifiers.org/biomodels.db/BIOMD0000000845"
Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems property "http://identifiers.org/mamo/MAMO_0000046"
Gulbudak2019___Heterogeneous_viral_strategies_promote_coexistence_in_virus_microbe_systems property "http://identifiers.org/go/GO:0019089"
