// Created by libAntimony v2.13.0
model *PRR_model()

  // Compartments and Species:
  compartment compartment_1;
  species species_1 in compartment_1, species_2 in compartment_1, species_3 in compartment_1;
  species species_4 in compartment_1, species_5 in compartment_1, species_6 in compartment_1;
  species species_7 in compartment_1, species_8 in compartment_1, species_9 in compartment_1;
  species species_10 in compartment_1, species_11 in compartment_1, species_12 in compartment_1;
  species species_13 in compartment_1, species_14 in compartment_1, species_15 in compartment_1;
  species species_16 in compartment_1, species_17 in compartment_1, species_18 in compartment_1;
  species species_19 in compartment_1, species_20 in compartment_1, species_21 in compartment_1;
  species species_22 in compartment_1, species_23 in compartment_1;

  // Assignment Rules:
  parameter_1 := species_12 + species_19 + species_22 + species_11 + species_14 + species_17 + species_21 + species_20 + species_16;

  // Reactions:
  reaction_1: species_2 + species_1 => species_3; compartment_1*reaction_1_k1*species_2*species_1;
  reaction_2: 2 species_5 => species_4; compartment_1*reaction_2_k1*species_5^2;
  reaction_3: species_4 => 2 species_5; compartment_1*reaction_3_k1*species_4;
  reaction_4: species_6 + species_8 => species_7; compartment_1*reaction_4_k1*species_6*species_8;
  reaction_5: species_3 + species_4 => species_9; compartment_1*reaction_5_k1*species_3*species_4;
  reaction_6: species_9 => species_3 + species_4; compartment_1*reaction_6_k1*species_9;
  reaction_7: species_7 + species_9 => species_10; compartment_1*reaction_7_k1*species_7*species_9;
  reaction_8: species_10 => species_7 + species_9; compartment_1*reaction_8_k1*species_10;
  reaction_9: species_10 => species_6 + species_11; compartment_1*reaction_9_k1*species_10;
  reaction_10: species_11 => species_4 + species_12; compartment_1*reaction_10_k1*species_11;
  reaction_11: species_8 + species_18 => species_15; compartment_1*reaction_11_k1*species_8*species_18;
  reaction_12: species_12 + species_13 => species_14; compartment_1*reaction_12_k1*species_12*species_13;
  reaction_13: species_14 => species_12 + species_13; compartment_1*reaction_13_k1*species_14;
  reaction_14: species_14 + species_15 => species_16; compartment_1*reaction_14_k1*species_14*species_15;
  reaction_15: species_16 => species_14 + species_15; compartment_1*reaction_15_k1*species_16;
  reaction_16: species_16 => species_18 + species_17; compartment_1*reaction_16_k1*species_16;
  reaction_17: species_17 => species_13 + species_19; compartment_1*reaction_17_k1*species_17;
  reaction_18: species_13 + species_19 => species_17; compartment_1*reaction_18_k1*species_13*species_19;
  reaction_19: species_15 + species_17 => species_20; compartment_1*reaction_19_k1*species_15*species_17;
  reaction_20: species_20 => species_15 + species_17; compartment_1*reaction_20_k1*species_20;
  reaction_21: species_20 => species_18 + species_21; compartment_1*reaction_21_k1*species_20;
  reaction_22: species_21 => species_13 + species_22; compartment_1*reaction_22_k1*species_21;
  reaction_23: species_12 => species_8 + species_23; compartment_1*reaction_23_k1*species_12;
  reaction_24: species_19 => 2 species_8 + species_23; compartment_1*reaction_24_k1*species_19;
  reaction_25: species_22 => 3 species_8 + species_23; compartment_1*reaction_25_k1*species_22;

  // Species initializations:
  species_1 = 1001;
  species_2 = 7480;
  species_3 = 0;
  species_4 = 0;
  species_5 = 206;
  species_6 = 194;
  species_7 = 0;
  species_8 = 8698;
  species_9 = 0;
  species_10 = 0;
  species_11 = 0;
  species_12 = 0;
  species_13 = 1520;
  species_14 = 0;
  species_15 = 0;
  species_16 = 0;
  species_17 = 0;
  species_18 = 193;
  species_19 = 0;
  species_20 = 0;
  species_21 = 0;
  species_22 = 0;
  species_23 = 0;

  // Compartment initializations:
  compartment_1 = 1;

  // Variable initializations:
  reaction_1_k1 = 1.5e-08;
  reaction_2_k1 = 0.01;
  reaction_3_k1 = 1000;
  reaction_4_k1 = 2.5e-07;
  reaction_5_k1 = 100000;
  reaction_6_k1 = 1000;
  reaction_7_k1 = 0.0351;
  reaction_8_k1 = 0.01;
  reaction_9_k1 = 0.01;
  reaction_10_k1 = 1;
  reaction_11_k1 = 100000;
  reaction_12_k1 = 5e-06;
  reaction_13_k1 = 0.005;
  reaction_14_k1 = 0.078;
  reaction_15_k1 = 1e-10;
  reaction_16_k1 = 0.05;
  reaction_17_k1 = 7.5e-06;
  reaction_18_k1 = 5e-06;
  reaction_19_k1 = 0.078;
  reaction_20_k1 = 1e-10;
  reaction_21_k1 = 0.005;
  reaction_22_k1 = 0.005;
  reaction_23_k1 = 3e-08;
  reaction_24_k1 = 0.0008;
  reaction_25_k1 = 0.005;

  // Other declarations:
  var parameter_1;
  const compartment_1;

  // Unit definitions:
  unit volume = dimensionless;
  unit substance = dimensionless;
  unit per_second = 1 / second;

  // Display Names:
  compartment_1 is "compartment";
  species_1 is "L";
  species_2 is "PCNA";
  species_3 is "PCNAon";
  species_4 is "Rad18:Rad18";
  species_5 is "Rad18";
  species_6 is "Rad6";
  species_7 is "Rad6U";
  species_8 is "U";
  species_9 is "Rad18:Rad18:PCNAon";
  species_10 is "Rad18:Rad18:PCNAon:Rad6U";
  species_11 is "Rad18:Rad18:PCNAonU";
  species_12 is "PCNAonU";
  species_13 is "Rad5";
  species_14 is "Rad5:PCNAonU";
  species_15 is "Ubc13U:Mms2";
  species_16 is "Ubc13U:Mms2:Rad5:PCNAonU";
  species_17 is "Rad5:PCNAonU:U";
  species_18 is "Ubc13:Mms2";
  species_19 is "PCNAonU:U";
  species_20 is "Ubc13U:Mms2:Rad5:PCNAonU:U";
  species_21 is "Rad5:PCNAonU:U:U";
  species_22 is "PCNAonU:U:U";
  species_23 is "PCNAoff";
  parameter_1 is "PCNA_sum";
  reaction_1 is "r01";
  reaction_2 is "r02";
  reaction_3 is "r03";
  reaction_4 is "r04";
  reaction_5 is "r05";
  reaction_6 is "r06";
  reaction_7 is "r07";
  reaction_8 is "r08";
  reaction_9 is "r09";
  reaction_10 is "r10";
  reaction_11 is "r11";
  reaction_12 is "r12";
  reaction_13 is "r13";
  reaction_14 is "r14";
  reaction_15 is "r15";
  reaction_16 is "r16";
  reaction_17 is "r17";
  reaction_18 is "r18";
  reaction_19 is "r19";
  reaction_20 is "r20";
  reaction_21 is "r21";
  reaction_22 is "r22";
  reaction_23 is "r23";
  reaction_24 is "r24";
  reaction_25 is "r25";

  // SBO terms:
  species_4.sboTerm = 286
  species_9.sboTerm = 297
  species_10.sboTerm = 297
  species_11.sboTerm = 297
  species_14.sboTerm = 297
  species_15.sboTerm = 297
  species_16.sboTerm = 297
  species_17.sboTerm = 297
  species_18.sboTerm = 297
  species_20.sboTerm = 297
  species_21.sboTerm = 297

  // CV terms:
  compartment_1 identity "http://identifiers.org/go/GO:0005623"
  species_1 hypernym "http://identifiers.org/go/GO:0035861"
  species_2 identity "http://identifiers.org/uniprot/P15873"
  species_3 hypernym "http://identifiers.org/uniprot/P15873"
  species_4 part "http://identifiers.org/uniprot/P10862"
  species_5 hypernym "http://identifiers.org/uniprot/P10862"
  species_6 hypernym "http://identifiers.org/uniprot/P06104"
  species_7 hypernym "http://identifiers.org/uniprot/P06104"
  species_7 property "http://identifiers.org/go/GO:0006513"
  species_8 hypernym "http://identifiers.org/uniprot/P0CG63"
  species_9 part "http://identifiers.org/uniprot/P10862",
                 "http://identifiers.org/uniprot/P15873"
  species_10 part "http://identifiers.org/uniprot/P10862",
                  "http://identifiers.org/uniprot/P15873",
                  "http://identifiers.org/uniprot/P06104"
  species_10 property "http://identifiers.org/go/GO:0006513"
  species_11 part "http://identifiers.org/uniprot/P10862",
                  "http://identifiers.org/uniprot/P15873"
  species_11 property "http://identifiers.org/go/GO:0006513"
  species_12 hypernym "http://identifiers.org/uniprot/P15873"
  species_12 property "http://identifiers.org/go/GO:0006513"
  species_13 hypernym "http://identifiers.org/uniprot/P32849"
  species_14 part "http://identifiers.org/uniprot/P32849",
                  "http://identifiers.org/uniprot/P15873"
  species_14 property "http://identifiers.org/go/GO:0006513"
  species_15 part "http://identifiers.org/uniprot/P52490",
                  "http://identifiers.org/uniprot/P53152"
  species_15 property "http://identifiers.org/go/GO:0006513"
  species_16 part "http://identifiers.org/uniprot/P52490",
                  "http://identifiers.org/uniprot/P53152",
                  "http://identifiers.org/uniprot/P32849",
                  "http://identifiers.org/uniprot/P15873"
  species_16 propertyBearer "http://identifiers.org/psimod/MOD:01148"
  species_17 part "http://identifiers.org/uniprot/P32849",
                  "http://identifiers.org/uniprot/P15873"
  species_17 property "http://identifiers.org/psimod/MOD:01148"
  species_18 part "http://identifiers.org/uniprot/P53152",
                  "http://identifiers.org/uniprot/P52490"
  species_19 part "http://identifiers.org/uniprot/P15873",
                  "http://identifiers.org/uniprot/P0CG63"
  species_19 property "http://identifiers.org/psimod/MOD:01148"
  species_20 part "http://identifiers.org/uniprot/P15873",
                  "http://identifiers.org/uniprot/P0CG63",
                  "http://identifiers.org/uniprot/P53152",
                  "http://identifiers.org/uniprot/P52490",
                  "http://identifiers.org/uniprot/P32849"
  species_20 property "http://identifiers.org/go/GO:0000209"
  species_21 part "http://identifiers.org/uniprot/P32849",
                  "http://identifiers.org/uniprot/P15873"
  species_21 property "http://identifiers.org/go/GO:0000209"
  species_22 property "http://identifiers.org/go/GO:0000209"
  species_22 hypernym "http://identifiers.org/uniprot/P15873"
  species_23 hypernym "http://identifiers.org/uniprot/P15873"
  reaction_1 hypernym "http://identifiers.org/go/GO:0016567"
  reaction_2 property "http://identifiers.org/go/GO:0042803"
  reaction_3 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_4 hypernym "http://identifiers.org/go/GO:0016567"
  reaction_5 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_6 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_7 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_8 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_9 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_10 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_11 hypernym "http://identifiers.org/go/GO:0016567"
  reaction_12 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_13 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_14 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_15 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_17 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_18 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_19 hypernym "http://identifiers.org/go/GO:0006461"
  reaction_20 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_21 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_22 hypernym "http://identifiers.org/go/GO:0043241"
  reaction_23 hypernym "http://identifiers.org/go/GO:0016579"
  reaction_24 hypernym "http://identifiers.org/go/GO:0016579"
  reaction_25 hypernym "http://identifiers.org/go/GO:0016579"
end

PRR_model is "Amara2013 - PCNA ubiquitylation in the activation of PRR pathway"

PRR_model model_entity_is "http://identifiers.org/biomodels.db/MODEL1211260000"
PRR_model model_entity_is "http://identifiers.org/biomodels.db/BIOMD0000000475"
PRR_model description "http://identifiers.org/pubmed/23514624"
PRR_model taxon "http://identifiers.org/taxonomy/4932"
PRR_model hypernym "http://identifiers.org/go/GO:0006301"
