// Created by libAntimony v2.13.0
model *DIIVENUS_fullmodel()

  // Compartments and Species:
  compartment cell;
  species auxin in cell, TIR1 in cell, auxinTIR1 in cell, auxinTIR1VENUS in cell;
  species VENUS in cell;

  // Reactions:
  auxin_TIR1association: auxin + TIR1 => auxinTIR1; ka*auxin*TIR1;
  auxin_TIR1dissociation: auxinTIR1 => auxin + TIR1; kd*auxinTIR1;
  auxin_TIR1_VENUSassociation: auxinTIR1 + VENUS => auxinTIR1VENUS; la*auxinTIR1*VENUS;
  auxin_TIR1_VENUSdissociation: auxinTIR1VENUS => auxinTIR1 + VENUS; ld*auxinTIR1VENUS;
  auxin_TIR1_VENUSdissociationleadingtoubiquitination: auxinTIR1VENUS => auxinTIR1; lm*auxinTIR1VENUS;
  auxinproduction:  => auxin; alpha_tr;
  auxindecay: auxin => ; mu*auxin;
  VENUSproduction:  => VENUS; delta;
  VENUSphotobleachingdecay: VENUS => ; lambda*VENUS;

  // Species initializations:
  auxin = 7.38;
  TIR1 = 15.4;
  auxinTIR1 = 0.28;
  auxinTIR1VENUS = 2.78;
  VENUS = 40.4;

  // Compartment initializations:
  cell = 1;

  // Variable initializations:
  kd = 0.334;
  ka = 0.000822;
  mu = 0.79;
  ld = 4.49;
  lm = 0.175;
  la = 1.15;
  delta = 0.486;
  lambda = 0.00316;
  TIR1T = 18.5;
  alpha_tr = 30.5;

  // Other declarations:
  const cell, kd, ka, mu, ld, lm, la, delta, lambda, TIR1T, alpha_tr;

  // SBO terms:
  cell.sboTerm = 290
  auxin.sboTerm = 252
  TIR1.sboTerm = 252
  auxinTIR1.sboTerm = 297
  auxinTIR1VENUS.sboTerm = 297
  VENUS.sboTerm = 297
  auxin_TIR1association.sboTerm = 526
  auxin_TIR1dissociation.sboTerm = 180
  auxin_TIR1_VENUSassociation.sboTerm = 526
  auxin_TIR1_VENUSdissociation.sboTerm = 180
  auxin_TIR1_VENUSdissociationleadingtoubiquitination.sboTerm = 180
  auxinproduction.sboTerm = 393
  auxindecay.sboTerm = 179
  VENUSproduction.sboTerm = 393
  VENUSphotobleachingdecay.sboTerm = 179

  // CV terms:
  cell hypernym "http://identifiers.org/go/GO:0005623"
  auxin hypernym "http://identifiers.org/uniprot/P49677"
  TIR1 hypernym "http://identifiers.org/uniprot/Q570C0",
                "http://identifiers.org/uniprot/Q9ZR12",
                "http://identifiers.org/uniprot/Q9LW29",
                "http://identifiers.org/uniprot/Q9LPW7"
  auxinTIR1 part "http://identifiers.org/uniprot/P49677",
                 "http://identifiers.org/uniprot/Q570C0"
  auxinTIR1VENUS part "http://identifiers.org/uniprot/P49677",
                      "http://identifiers.org/uniprot/Q570C0",
                      "http://identifiers.org/uniprot/Q9XFM0",
                      "http://identifiers.org/uniprot/Q940U6"
  VENUS part "http://identifiers.org/uniprot/Q940U6",
             "http://identifiers.org/uniprot/Q9XFM0"
  auxin_TIR1association hypernym "http://identifiers.org/go/GO:0006461"
  auxin_TIR1dissociation hypernym "http://identifiers.org/go/GO:0043241"
  auxin_TIR1_VENUSassociation hypernym "http://identifiers.org/go/GO:0006461"
  auxin_TIR1_VENUSdissociation hypernym "http://identifiers.org/go/GO:0043241"
  auxin_TIR1_VENUSdissociationleadingtoubiquitination hypernym "http://identifiers.org/go/GO:0043241"
  auxinproduction hypernym "http://identifiers.org/go/GO:0006412"
  auxindecay hypernym "http://identifiers.org/go/GO:0030163"
  VENUSproduction hypernym "http://identifiers.org/go/GO:0006412"
  VENUSphotobleachingdecay hypernym "http://identifiers.org/go/GO:0030163"
end

DIIVENUS_fullmodel is "Band2012_DII-Venus_FullModel"

DIIVENUS_fullmodel model_entity_is "http://identifiers.org/biomodels.db/MODEL1203230002"
DIIVENUS_fullmodel model_entity_is "http://identifiers.org/biomodels.db/BIOMD0000000413"
DIIVENUS_fullmodel description "http://identifiers.org/pubmed/22393022"
DIIVENUS_fullmodel taxon "http://identifiers.org/taxonomy/3701"
DIIVENUS_fullmodel hypernym "http://identifiers.org/go/GO:0090354",
                            "http://identifiers.org/go/GO:0009958"
DIIVENUS_fullmodel property "http://identifiers.org/mamo/MAMO_0000046"
