// Created by libAntimony v2.13.0
model *Radulescu2008_NFkB_hierarchy_M_39_65_90()

  // Compartments and Species:
  compartment default, c1;
  species s22 in c1, s36 in c1, s65 in c1, s93 in c1, $s108 in c1, $s109 in default;
  species s110 in default, $s111 in default, $s112 in default, s113 in default;
  species s114 in default, s117 in default, $s118 in default, s119 in default;
  species $s120 in default, $s122 in default, s123 in default, s124 in default;
  species s126 in c1, s127 in default, s128 in default, $s129 in default;
  species s130 in default, $s131 in default, s132 in default, s133 in default;
  species $s134 in default, s150 in c1, $s153 in default, $s154 in default;
  species $s156 in default, $s157 in default, $s158 in c1, s160 in c1, s165 in c1;
  species s170 in c1, s173 in c1, s178 in default, s185 in c1, s188 in default;
  species s189 in default, s190 in default, s191 in default, s192 in c1, s193 in c1;
  species s194 in c1, s195 in c1, s196 in c1, s197 in c1, s198 in c1, s199 in c1;
  species s200 in c1, s201 in c1, s205 in c1, s206 in c1, s209 in c1, s212 in c1;
  species s213 in c1, s214 in c1, s215 in c1;

  // Reactions:
  re1: s22 + s198 => s199; kf32*s198*s22 - kr32*s199;
  re8: s199 + s195 => s200; kf64*s195*s199 - kr64*s200;
  re14: s195 + s206 => s214; kf56*s195*s206 - kr56*s214;
  re15: s93 + s212 => s213; kf57*s93*s212 - kr57*s213;
  re19: s195 + s198 => s196; kf63*s195*s198 - kr63*s196;
  re20: s196 + s93 => s197; kf65*s93*s196 - kr65*s197;
  re21: s195 + s205 => s212; kf55*s195*s205 - kr55*s212;
  re22: s200 + s93 => s201; kf66*s93*s200 - kr66*s201;
  re23: s93 + s214 => s215; kf58*s93*s214 - kr58*s215;
  re24: s65 + s205 => s206; kf48*s65*s205 - kr48*s206;
  re25: s197 => s198 + s192; kf67*s197 - kr67*s192*s198;
  re26: s201 => s199 + s192; kf68*s201 - kr68*s192*s199;
  re27: s215 => s206 + s192; kf60*s215 - kr60*s192*s206;
  re28: s213 => s205 + s192; kf59*s213 - kr59*s192*s205;
  re29: s193 + s36 => s194; kf41*s36*s193 - kr41*s194;
  re30: s160 => s165; k42*s193 + k43*s194;
  re31: s170 => s173; k33*s198 + k34*s199 + k69*s196 + k70*s200;
  re32: s209 => s185; k49*s205 + k50*s206 + k62*s214 + k61*s212;
  re33: s195 => $s108; k54*s195;
  re34: s173 => s113; k35*s173;
  re35: s110 => $s109; k38*s110;
  re36: s113 => $s112; k37*s113;
  re37: s113 => s110 + s113; k36*s113;
  re38: s110 => s114; k39*s110;
  re39: s114 => $s111; k40*s114;
  re40: s165 => s117; k44*s165;
  re41: s117 => $s118; k46*s117;
  re42: s119 => $s120; k47*s119;
  re43: s117 => s119 + s117; k45*s117;
  re44: s185 => s178; k51*s185;
  re45: s178 => s124; k27*s178;
  re46: s123 => $s122; k21*s123;
  re47: s178 => s123 + s178; k22*s178;
  re48: s126 => s127; k19 + k20*s195;
  re49: s133 => s132; k1*s133;
  re52: s188 => s190; k12*s188;
  re53: s133 => $s131; k2*s133;
  re56: s132 => $s134; k6*s132;
  re57: s191 => s132; k8*s191;
  re58: s132 + s188 => s189; k9*s132*s188;
  re59: s189 => s190 + s132; k10*s189;
  re60: s130 => $s129; k11*s130;
  re61: s127 => s128 + s127; k16*s127;
  re62: s114 + s119 => s190; kf52*s114*s119 - kr52*s190;
  re63: s132 => s130; k5*s132 + k4*s132*s128;
  re64: s150 => s133; k3;
  re65: s123 + s190 => s188; kf13*s190*s123 - kr13*s188;
  re66: s123 + s132 => s191; k7*s132*s123;
  re67: s190 => 5 s195; kf15*s190 - kr15*s195;
  re68: 5 s192 => s188; kf28*s192 - kr28*s188;
  re69: s195 + s93 => s192; kf14*s195*s93 - kr14*s192;
  re70: s127 => $s153; k17*s127;
  re71: s128 => $s154; k18*s128;
  re72: s123 => 5 s93; kf23*s123 - kr23*s93;
  re74: s190 => $s156; k53*s190;
  re75: s188 => $s157; k71*s188;
  re76: s192 => $s158; k72*s192;

  // Events:
  signal: at 0 after time > 72000: k1 = 0.0025;

  // Species initializations:
  s22 = 0.000333333333333333/c1;
  s36 = 0.000333333333333333/c1;
  s65 = 0.000333333333333333/c1;
  s93 = 0;
  s108 = 0;
  s109 = 0;
  s110 = 0;
  s111 = 0;
  s112 = 0;
  s113 = 0;
  s114 = 0;
  s117 = 0;
  s118 = 0;
  s119 = 0;
  s120 = 0;
  s122 = 0;
  s123 = 0;
  s124 = 0;
  s126 = 0;
  s127 = 0;
  s128 = 0;
  s129 = 0;
  s130 = 0;
  s131 = 0;
  s132 = 0;
  s133 = 0;
  s134 = 0;
  s150 = 0;
  s153 = 0;
  s154 = 0;
  s156 = 0;
  s157 = 0;
  s158 = 0;
  s160 = 0;
  s165 = 0;
  s170 = 0;
  s173 = 0;
  s178 = 0;
  s185 = 0;
  s188 = 0;
  s189 = 0;
  s190 = 0;
  s191 = 0;
  s192 = 0;
  s193 = 6.66666666666667e-06/c1;
  s194 = 0;
  s195 = 0;
  s196 = 0;
  s197 = 0;
  s198 = 6.66666666666667e-06/c1;
  s199 = 0;
  s200 = 0;
  s201 = 0;
  s205 = 6.66666666666667e-06/c1;
  s206 = 0;
  s209 = 0;
  s212 = 0;
  s213 = 0;
  s214 = 0;
  s215 = 0;

  // Compartment initializations:
  default = 1;
  c1 = 1;

  // Variable initializations:
  k1 = 0;
  k2 = 0.000125;
  k3 = 1e-05;
  k4 = 0.1;
  k5 = 0.0015;
  k6 = 0.000125;
  k7 = 0.24;
  k8 = 0.1;
  k9 = 1.2;
  k10 = 0.1;
  k11 = 0.000125;
  k12 = 2e-05;
  kf13 = 0.5;
  kr13 = 0;
  kf14 = 0.5;
  kr14 = 0;
  kf15 = 0.0025;
  kr15 = 8e-05;
  k16 = 0.5;
  k17 = 0.0004;
  k18 = 0.0003;
  k20 = 5e-07;
  k19 = 0;
  k21 = 0.0001;
  k22 = 0.5;
  kf23 = 0.001;
  kr23 = 0.0005;
  k25 = 0;
  k27 = 0.0004;
  kf28 = 0.01;
  kr28 = 0;
  kf32 = 10;
  kr32 = 0.0001;
  k42 = 0.0005;
  k43 = 0.1;
  k33 = 0.0005;
  k34 = 0.1;
  k69 = 0.006;
  k70 = 0.06;
  k49 = 0.0005;
  k50 = 0.02;
  k61 = 0.06;
  k62 = 0.6;
  k35 = 0.01;
  k36 = 0.0041;
  k37 = 5e-05;
  k38 = 6e-05;
  k39 = 0.00013;
  k40 = 6.4e-05;
  kf41 = 10;
  kr41 = 0.0001;
  k44 = 0.016;
  k45 = 0.0053;
  k46 = 5e-05;
  k47 = 6.4e-05;
  kf48 = 10;
  kr48 = 0.0001;
  k51 = 0.025;
  kf52 = 0.003;
  kr52 = 0.001;
  k53 = 0.0002;
  k54 = 0.0002;
  kf55 = 0.62;
  kr55 = 0.00048;
  kf56 = 0.62;
  kr56 = 0.00048;
  kf57 = 18.4;
  kr57 = 0.055;
  kf58 = 18.4;
  kr58 = 0.055;
  kf59 = 0.0038;
  kr59 = 8e-13;
  kf60 = 0.0038;
  kr60 = 8e-13;
  kf63 = 0.62;
  kr63 = 0.00048;
  kf64 = 0.62;
  kr64 = 0.00048;
  kf65 = 18.4;
  kr65 = 0.055;
  kf66 = 18.4;
  kr66 = 0.055;
  kf67 = 0.0038;
  kr67 = 8e-13;
  kf68 = 0.0038;
  kr68 = 8e-13;
  k71 = 0.0002;
  k72 = 0.0002;

  // Other declarations:
  var k1;
  const default, c1, k2, k3, k4, k5, k6, k7, k8, k9, k10, k11, k12, kf13;
  const kr13, kf14, kr14, kf15, kr15, k16, k17, k18, k20, k19, k21, k22, kf23;
  const kr23, k25, k27, kf28, kr28, kf32, kr32, k42, k43, k33, k34, k69, k70;
  const k49, k50, k61, k62, k35, k36, k37, k38, k39, k40, kf41, kr41, k44;
  const k45, k46, k47, kf48, kr48, k51, kf52, kr52, k53, k54, kf55, kr55;
  const kf56, kr56, kf57, kr57, kf58, kr58, kf59, kr59, kf60, kr60, kf63;
  const kr63, kf64, kr64, kf65, kr65, kf66, kr66, kf67, kr67, kf68, kr68;
  const k71, k72;

  // Display Names:
  c1 is "nucleus";
  s22 is "FTAx";
  s36 is "FTAy";
  s65 is "FTAz";
  s93 is "IkB_alpha";
  s108 is "csa17_degraded";
  s109 is "sa4_degraded";
  s110 is "p105";
  s111 is "sa438_degraded";
  s112 is "sa3_degraded";
  s113 is "mRNAp105";
  s114 is "p50";
  s117 is "mRNAp65";
  s118 is "sa8_degraded";
  s119 is "p65";
  s120 is "sa9_degraded";
  s122 is "sa13_degraded";
  s123 is "IkB_alpha";
  s124 is "sa12_degraded";
  s126 is "A20";
  s127 is "mRNAA20";
  s128 is "A20";
  s129 is "sa444_degraded";
  s130 is "IKKi";
  s131 is "sa19_degraded";
  s132 is "IKKa";
  s133 is "IKKn";
  s134 is "sa20_degraded";
  s150 is "IKK";
  s153 is "sa96_degraded";
  s154 is "sa97_degraded";
  s156 is "csa21_degraded";
  s157 is "csa18_degraded";
  s158 is "csa9_degraded";
  s160 is "InactivePRaseonp65";
  s165 is "ActivePRaseonp65";
  s170 is "InactivePRaseonp105";
  s173 is "ActivePRaseonp105";
  s178 is "mRNAIKB_alpha";
  s185 is "ActivePRaseonIkB_alpha";
  s188 is "NFkB:IkB_alpha";
  s189 is "NFkB:IKKa:Ikb_alpha";
  s190 is "NFkB";
  s191 is "IKKa:IKB_alpha";
  s192 is "NFkB:IkB_alpha";
  s193 is "Promp65:RNAP2";
  s194 is "Promp65:RNAP2:FTAy";
  s195 is "NFkB";
  s196 is "Promp105:RNAP1:p50p65";
  s197 is "Promp105:RNAP1:p50p65:IkBa";
  s198 is "Promp105:RNAP";
  s199 is "Promp105:RNAP:FTAX";
  s200 is "Promp105:RNAP1:FTAx:p50p65";
  s201 is "Promp105:RNAP1:FTAx:p50p65:IkBa";
  s205 is "PromIkBa:RNAP3";
  s206 is "PromIkBa:RNAP3:FTAz";
  s209 is "InactivePRaseonIkB_alpha";
  s212 is "PromIkBa:RNAP3:p50p65";
  s213 is "PromIkBa:RNAP3:p50p65:IkBa";
  s214 is "IkBa:RNAP3:FTAz:p50p65";
  s215 is "PromIkBa:RNAP3:FTAz:p50p65:IkB_alpha";

  // CV terms:
  default identity "http://identifiers.org/go/GO:0005829"
  c1 hypernym "http://identifiers.org/go/GO:0005634"
  s22 hypernym "http://identifiers.org/uniprot/Q04863"
  s36 hypernym "http://identifiers.org/uniprot/Q04863"
  s65 hypernym "http://identifiers.org/uniprot/Q04863"
  s93 hypernym "http://identifiers.org/uniprot/Q9Z1E3"
  s110 hypernym "http://identifiers.org/uniprot/P25799"
  s113 hypernym "http://identifiers.org/ensembl/ENSMUST00000029812"
  s114 parthood "http://identifiers.org/uniprot/P25799"
  s117 hypernym "http://identifiers.org/ensembl/ENSMUST00000025867"
  s119 hypernym "http://identifiers.org/uniprot/Q04207"
  s123 hypernym "http://identifiers.org/uniprot/Q9Z1E3"
  s126 hypernym "http://identifiers.org/uniprot/Q60769"
  s127 hypernym "http://identifiers.org/ensembl/ENSMUST00000019997"
  s128 hypernym "http://identifiers.org/uniprot/Q60769"
  s130 part "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522"
  s132 part "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522"
  s133 part "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522"
  s150 part "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522"
  s178 hypernym "http://identifiers.org/ensembl/ENSMUST00000021413"
  s188 part "http://identifiers.org/uniprot/P25799",
            "http://identifiers.org/uniprot/Q9Z1E3",
            "http://identifiers.org/uniprot/Q04207"
  s189 part "http://identifiers.org/uniprot/P25799",
            "http://identifiers.org/uniprot/Q9Z1E3",
            "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522",
            "http://identifiers.org/uniprot/Q04207"
  s190 hypernym "http://identifiers.org/uniprot/P25799",
                "http://identifiers.org/uniprot/Q04207"
  s191 part "http://identifiers.org/uniprot/Q60680",
            "http://identifiers.org/uniprot/O88351",
            "http://identifiers.org/uniprot/O88522",
            "http://identifiers.org/uniprot/Q9Z1E3"
  s192 part "http://identifiers.org/uniprot/P25799",
            "http://identifiers.org/uniprot/Q04207",
            "http://identifiers.org/uniprot/Q9Z1E3"
  s195 part "http://identifiers.org/uniprot/P25799",
            "http://identifiers.org/uniprot/Q04207"
end

Radulescu2008_NFkB_hierarchy_M_39_65_90 is "Radulescu2008_NFkB_hierarchy_M_39_65_90"

Radulescu2008_NFkB_hierarchy_M_39_65_90 model_entity_is "http://identifiers.org/biomodels.db/MODEL7743656488"
Radulescu2008_NFkB_hierarchy_M_39_65_90 model_entity_is "http://identifiers.org/biomodels.db/BIOMD0000000227"
Radulescu2008_NFkB_hierarchy_M_39_65_90 description "http://identifiers.org/pubmed/18854041"
Radulescu2008_NFkB_hierarchy_M_39_65_90 origin "http://identifiers.org/biomodels.db/BIOMD0000000139",
                                               "http://identifiers.org/biomodels.db/BIOMD0000000140",
                                               "http://identifiers.org/pubmed/15094015"
Radulescu2008_NFkB_hierarchy_M_39_65_90 taxon "http://identifiers.org/taxonomy/10090"
Radulescu2008_NFkB_hierarchy_M_39_65_90 parthood "http://identifiers.org/kegg.pathway/mmu04660"
Radulescu2008_NFkB_hierarchy_M_39_65_90 hypernym "http://identifiers.org/go/GO:0007249"
