// Created by libAntimony v2.13.0
model *Zeilinger2006_PRR7_PRR9light_Y()

  // Compartments and Species:
  compartment cytoplasm, nucleus;
  species cLc in cytoplasm, cLm in nucleus, cLn in nucleus, cP7c in cytoplasm;
  species cP7m in nucleus, cP7n in nucleus, cP9c in cytoplasm, cP9m in nucleus;
  species cP9n in nucleus, cPn in nucleus, cTc in cytoplasm, cTm in nucleus;
  species cTn in nucleus, cXc in cytoplasm, cXm in nucleus, cXn in nucleus;
  species cYc in cytoplasm, cYm in nucleus, cYn in nucleus;

  // Reactions:
  R1:  => cLm; nucleus*ld*q1*cPn;
  R2:  => cLm; nucleus*(n1*cXn^a/(g1^a + cXn^a))*(g7^h/(g7^h + cP7n^h))*(g8^i/(g8^i + cP9n^i));
  R3: cLm => ; nucleus*m1*cLm/(k1 + cLm);
  R4:  => cLc; cytoplasm*p1*cLm;
  R5: cLc => cLn; cytoplasm*r1*cLc;
  R6: cLn => cLc; nucleus*r2*cLn;
  R7: cLc => ; cytoplasm*m2*cLc/(k2 + cLc);
  R8: cLn => ; nucleus*m3*cLn/(k3 + cLn);
  R9:  => cTm; nucleus*(n2*cYn^b/(g2^b + cYn^b))*(g3^c/(g3^c + cLn^c));
  R10: cTm => ; nucleus*m4*cTm/(k4 + cTm);
  R11:  => cTc; cytoplasm*p2*cTm;
  R12: cTc => cTn; cytoplasm*r3*cTc;
  R13: cTn => cTc; nucleus*r4*cTn;
  R14: cTc => ; cytoplasm*((lmax - ld)*m5 + m6)*(cTc/(k5 + cTc));
  R15: cTn => ; nucleus*((lmax - ld)*m7 + m8)*(cTn/(k6 + cTn));
  R16:  => cXm; nucleus*(n3*cTn^d/(g4^d + cTn^d));
  R17: cXm => ; nucleus*(m9*cXm/(k7 + cXm));
  R18:  => cXc; cytoplasm*p3*cXm;
  R19: cXc => cXn; cytoplasm*r5*cXc;
  R20: cXn => cXc; nucleus*r6*cXn;
  R21: cXc => ; cytoplasm*m10*cXc/(k8 + cXc);
  R22: cXn => ; nucleus*m11*cXn/(k9 + cXn);
  R23:  => cYm; nucleus*(ld*q2*cPn + (ld*n4 + n5)*g5^e/(g5^e + cTn^e))*(g6^f/(g6^f + cLn^f));
  R24: cYm => ; nucleus*m12*cYm/(k10 + cYm);
  R25:  => cYc; cytoplasm*p4*cYm;
  R26: cYc => cYn; cytoplasm*r7*cYc;
  R27: cYn => cYc; nucleus*r8*cYn;
  R28: cYc => ; cytoplasm*m13*cYc/(k11 + cYc);
  R29: cYn => ; nucleus*m14*cYn/(k12 + cYn);
  R30:  => cPn; nucleus*(lmax - ld)*p5;
  R31a: cPn => ; nucleus*m15*cPn/(k13 + cPn);
  R31b: cPn => ; nucleus*q3*ld*cPn;
  R32:  => cP7m; nucleus*n6*cLn^j/(g9^j + cLn^j);
  R33: cP7m => ; nucleus*m16*cP7m/(k14 + cP7m);
  R34:  => cP7c; cytoplasm*p6*cP7m;
  R35: cP7c => cP7n; cytoplasm*r9*cP7c;
  R36: cP7n => cP7c; nucleus*r10*cP7n;
  R37: cP7c => ; cytoplasm*m17*cP7c/(k15 + cP7c);
  R38: cP7n => ; nucleus*m18*cP7n/(k16 + cP7n);
  R39:  => cP9m; (ld*q4*cPn + n7*ld + n8)*cLn^k/(g10^k + cLn^k);
  R40: cP9m => ; nucleus*m19*cP9m/(k17 + cP9m);
  R41:  => cP9c; cytoplasm*p7*cP9m;
  R42: cP9c => cP9n; cytoplasm*r11*cP9c;
  R43: cP9n => cP9c; nucleus*r12*cP9n;
  R44: cP9c => ; cytoplasm*m20*cP9c/(k18 + cP9c);
  R45: cP9n => ; nucleus*m21*cP9n/(k19 + cP9n);

  // Events:
  event_0000001: at (Day_in_hours - time) <= 0: ld = 1, Day_in_hours = Day_in_hours + 24;
  event_0000002: at ((Day_in_hours - time) <= 12) && ((Day_in_hours - time) > 0): ld = 0;

  // Species initializations:
  cLc = 0.0731;
  cLm = 0.1114;
  cLn = 0.2366;
  cP7c = 0.0266;
  cP7m = 0.0204;
  cP7n = 1.5103;
  cP9c = 0.734;
  cP9m = 0.002;
  cP9n = 1.1162;
  cPn = 0;
  cTc = 5.2235;
  cTm = 3.6732;
  cTn = 4.5333;
  cXc = 2.4188;
  cXm = 0.652;
  cXn = 14.7289;
  cYc = 49.2611;
  cYm = 0.2992;
  cYn = 17.4355;

  // Compartment initializations:
  cytoplasm = 1;
  nucleus = 1;

  // Variable initializations:
  Day_in_hours = 24;
  Day_in_hours has time_unit;
  ld = 1;
  ld has dimensionless;
  q1 = 7.9798;
  q1 has Hr_inv;
  n1 = 2.3023;
  n1 has nM_per_hour;
  g1 = 16.3389;
  g1 has nM;
  m1 = 8.0568;
  m1 has nM_per_hour;
  k1 = 22.3951;
  k1 has nM;
  p1 = 1.2294;
  p1 has Hr_inv;
  r1 = 31.5166;
  r1 has Hr_inv;
  r2 = 9.1138;
  r2 has Hr_inv;
  m2 = 10.4609;
  m2 has nM_per_hour;
  k2 = 32.7881;
  k2 has nM;
  m3 = 12.7853;
  m3 has nM_per_hour;
  k3 = 29.0823;
  k3 has nM;
  n2 = 7.5433;
  n2 has nM_per_hour;
  g2 = 16.7487;
  g2 has nM;
  g3 = 11.5922;
  g3 has nM;
  m4 = 8.5185;
  m4 has nM_per_hour;
  k4 = 4.0551;
  k4 has nM;
  p2 = 1.0494;
  p2 has Hr_inv;
  p3 = 8.583;
  p3 has Hr_inv;
  r5 = 27.818;
  r5 has Hr_inv;
  r6 = 4.2863;
  r6 has Hr_inv;
  m10 = 9.2511;
  m10 has nM_per_hour;
  k8 = 13.4324;
  k8 has nM;
  m11 = 7.9066;
  m11 has nM_per_hour;
  k9 = 14.605;
  k9 has nM;
  q2 = 2.5505;
  q2 has Hr_inv;
  n4 = 1.5293;
  n4 has nM_per_hour;
  n5 = 2.6296;
  n5 has nM_per_hour;
  g5 = 0.5061;
  g5 has nM;
  g6 = 7.8469;
  g6 has nM;
  m12 = 8.4753;
  m12 has nM_per_hour;
  k10 = 16.1162;
  k10 has nM;
  r3 = 29.4222;
  r3 has Hr_inv;
  r4 = 33.6178;
  r4 has Hr_inv;
  m5 = 9.3024;
  m5 has nM_per_hour;
  m6 = 10.899;
  m6 has nM_per_hour;
  k5 = 16.9133;
  k5 has nM;
  m7 = 0.7527;
  m7 has nM_per_hour;
  m8 = 13.7459;
  m8 has nM_per_hour;
  k6 = 43.7049;
  k6 has nM;
  n3 = 0.6703;
  n3 has nM_per_hour;
  g4 = 11.3625;
  g4 has nM;
  m9 = 2.6345;
  m9 has nM_per_hour;
  k7 = 8.6873;
  k7 has nM;
  p4 = 14.6828;
  p4 has Hr_inv;
  r7 = 9.1917;
  r7 has Hr_inv;
  r8 = 25.8963;
  r8 has Hr_inv;
  m13 = 6.8544;
  m13 has nM_per_hour;
  k11 = 48.5862;
  k11 has nM;
  m14 = 3.2581;
  m14 has nM_per_hour;
  k12 = 23.2876;
  k12 has nM;
  p5 = 0.5;
  p5 has nM_per_hour;
  k13 = 1.2;
  k13 has nM;
  q3 = 1;
  q3 has Hr_inv;
  m15 = 1.2;
  m15 has nM_per_hour;
  g7 = 0.4444;
  g7 has nM;
  g8 = 11.0459;
  g8 has nM;
  n6 = 11.3117;
  n6 has nM_per_hour;
  g9 = 14.5219;
  g9 has nM;
  m16 = 9.531;
  m16 has nM_per_hour;
  k14 = 50.9418;
  k14 has nM;
  p6 = 6.7738;
  p6 has Hr_inv;
  r9 = 31.0318;
  r9 has Hr_inv;
  r10 = 0.4557;
  r10 has Hr_inv;
  m17 = 5.4062;
  m17 has nM_per_hour;
  k15 = 49.4094;
  k15 has nM;
  m18 = 8.671;
  m18 has nM_per_hour;
  k16 = 42.4837;
  k16 has nM;
  n7 = 0.0833;
  n7 has nM_per_hour;
  g10 = 5.6855;
  g10 has nM;
  m19 = 6.1155;
  m19 has nM_per_hour;
  k17 = 18.6089;
  k17 has nM;
  p7 = 10.4532;
  p7 has Hr_inv;
  r11 = 34.6266;
  r11 has Hr_inv;
  r12 = 22.838;
  r12 has Hr_inv;
  m20 = 3.4152;
  m20 has nM_per_hour;
  k18 = 16.2407;
  k18 has nM;
  m21 = 0.028;
  m21 has nM_per_hour;
  k19 = 26.5795;
  k19 has nM;
  q4 = 7.4548;
  q4 has Hr_inv;
  n8 = 2.0738;
  n8 has nM;
  lmax = 1;
  lmax has dimensionless;
  a = 2.2802;
  a has dimensionless;
  b = 3.1075;
  b has dimensionless;
  c = 1.6808;
  c has dimensionless;
  d = 1.0164;
  d has dimensionless;
  e = 1.4943;
  e has dimensionless;
  f = 1.9491;
  f has dimensionless;
  h = 2.2116;
  h has dimensionless;
  i = 1.1065;
  i has dimensionless;
  j = 2.5579;
  j has dimensionless;
  k = 3.3953;
  k has dimensionless;

  // Other declarations:
  var Day_in_hours, ld;
  const cytoplasm, nucleus, q1, n1, g1, m1, k1, p1, r1, r2, m2, k2, m3, k3;
  const n2, g2, g3, m4, k4, p2, p3, r5, r6, m10, k8, m11, k9, q2, n4, n5;
  const g5, g6, m12, k10, r3, r4, m5, m6, k5, m7, m8, k6, n3, g4, m9, k7;
  const p4, r7, r8, m13, k11, m14, k12, p5, k13, q3, m15, g7, g8, n6, g9;
  const m16, k14, p6, r9, r10, m17, k15, m18, k16, n7, g10, m19, k17, p7;
  const r11, r12, m20, k18, m21, k19, q4, n8, lmax, a, b, c, d, e, f, h, i;
  const j, k;

  // Unit definitions:
  unit substance = 1e-9 mole;
  unit time_unit = 3600 second;
  unit Hr_inv = 1 / 3600 second;
  unit nM = 1e-9 mole / litre;
  unit nM_per_hour = 1e-9 mole / (litre * 3600 second);

  // Display Names:
  substance is "nanomoles";
  time_unit is "hour";
  Hr_inv is "Hour_inv";
  R1 is "Light dependent cLm synthesis";
  R2 is "Light independent cLm synthesis";
  R3 is "cLm degradation";
  R4 is "cLc synthesis";
  R5 is "cLc transport into nucleus";
  R6 is "cLn transport into cytoplasm";
  R7 is "cLc degradation";
  R8 is "cLn degradation";
  R9 is "cTm transcription";
  R10 is "cTm degradation";
  R11 is "cTc synthesis";
  R12 is "cTc transport into nucleus";
  R13 is "cTn transport into cytoplasm";
  R14 is "cTc degradation";
  R15 is "cTn degradation";
  R16 is "cXm transcription";
  R17 is "cXm degradation";
  R18 is "cXc transcription";
  R19 is "cXc transport into nucleus";
  R20 is "cXn transport into cytoplasm";
  R21 is "cXc degradation";
  R22 is "cXn degradation";
  R23 is "cYm transcription";
  R24 is "cYm degradation";
  R25 is "cYc transcription";
  R26 is "cYc transport to nucleus";
  R27 is "cYn transport to cytoplasm";
  R28 is "cYc degradation";
  R29 is "cYn degradation";
  R30 is "cPn synthesis";
  R31a is "cPn degradation";
  R31b is "Light dependent cPn degradation";
  R32 is "cP7m transcription";
  R33 is "cP7m degradation";
  R34 is "cP7c synthesis";
  R35 is "cP7c transport to nucleus";
  R36 is "cP7n transport to cytoplasm";
  R37 is "cP7c degradation";
  R38 is "cP7n degradation";
  R39 is "cP9m transcription";
  R40 is "cP79m degradation";
  R41 is "cP9c synthesis";
  R42 is "cP9c transport to nucleus";
  R43 is "cP9n transport to cytoplasm";
  R44 is "cP9c degradation";
  R45 is "cP9n degradation";

  // CV terms:
  cytoplasm identity "http://identifiers.org/obo.go/GO:0005737"
  nucleus identity "http://identifiers.org/obo.go/GO:0005634"
  cLc identity "http://identifiers.org/uniprot/O81713"
  cLm identity "http://identifiers.org/obo.chebi/CHEBI:33699",
               "http://identifiers.org/kegg.compound/C00046"
  cLn identity "http://identifiers.org/uniprot/O81713"
  cP7c identity "http://identifiers.org/uniprot/Q93WK5"
  cP7m identity "http://identifiers.org/obo.chebi/CHEBI:33699",
                "http://identifiers.org/kegg.compound/C00046"
  cP7n identity "http://identifiers.org/uniprot/Q93WK5"
  cP9c identity "http://identifiers.org/uniprot/Q8L500"
  cP9m identity "http://identifiers.org/obo.chebi/CHEBI:33699",
                "http://identifiers.org/kegg.compound/C00046"
  cP9n identity "http://identifiers.org/uniprot/Q8L500"
  cTc identity "http://identifiers.org/uniprot/Q9LKL2",
               "http://identifiers.org/interpro/IPR010402"
  cTm identity "http://identifiers.org/obo.chebi/CHEBI:33699",
               "http://identifiers.org/kegg.compound/C00046"
  cTn identity "http://identifiers.org/uniprot/Q9LKL2"
  cXm identity "http://identifiers.org/obo.chebi/CHEBI:33699",
               "http://identifiers.org/kegg.compound/C00046"
  cXn identity "http://identifiers.org/obo.go/GO:0005667"
  cYm identity "http://identifiers.org/obo.chebi/CHEBI:33699",
               "http://identifiers.org/kegg.compound/C00046"
  cYn identity "http://identifiers.org/obo.go/GO:0005667"
  R1 identity "http://identifiers.org/obo.go/GO:0006351",
              "http://identifiers.org/obo.go/GO:0009642"
  R2 identity "http://identifiers.org/obo.go/GO:0006351"
  R3 identity "http://identifiers.org/obo.go/GO:0006402"
  R4 identity "http://identifiers.org/obo.go/GO:0006412"
  R5 identity "http://identifiers.org/obo.go/GO:0000060"
  R6 identity "http://identifiers.org/obo.go/GO:0065002"
  R7 identity "http://identifiers.org/obo.go/GO:0044257"
  R8 identity "http://identifiers.org/obo.go/GO:0044257"
  R9 identity "http://identifiers.org/obo.go/GO:0006351"
  R10 identity "http://identifiers.org/obo.go/GO:0006402"
  R11 identity "http://identifiers.org/obo.go/GO:0006412"
  R12 identity "http://identifiers.org/obo.go/GO:0000060"
  R13 identity "http://identifiers.org/obo.go/GO:0065002"
  R14 identity "http://identifiers.org/obo.go/GO:0044257"
  R15 identity "http://identifiers.org/obo.go/GO:0044257"
  R16 identity "http://identifiers.org/obo.go/GO:0006351"
  R17 identity "http://identifiers.org/obo.go/GO:0006402"
  R18 identity "http://identifiers.org/obo.go/GO:0006412"
  R19 identity "http://identifiers.org/obo.go/GO:0000060"
  R20 identity "http://identifiers.org/obo.go/GO:0065002"
  R21 identity "http://identifiers.org/obo.go/GO:0044257"
  R22 identity "http://identifiers.org/obo.go/GO:0044257"
  R23 identity "http://identifiers.org/obo.go/GO:0006351",
               "http://identifiers.org/obo.go/GO:0009642"
  R24 identity "http://identifiers.org/obo.go/GO:0006402"
  R25 identity "http://identifiers.org/obo.go/GO:0006412"
  R26 identity "http://identifiers.org/obo.go/GO:0000060"
  R27 identity "http://identifiers.org/obo.go/GO:0065002"
  R28 identity "http://identifiers.org/obo.go/GO:0044257"
  R29 identity "http://identifiers.org/obo.go/GO:0044257"
  R30 identity "http://identifiers.org/obo.go/GO:0009642",
               "http://identifiers.org/obo.go/GO:0006412"
  R31a identity "http://identifiers.org/obo.go/GO:0044257"
  R31b identity "http://identifiers.org/obo.go/GO:0045732",
                "http://identifiers.org/obo.go/GO:0009642"
  R32 identity "http://identifiers.org/obo.go/GO:0006351"
  R33 identity "http://identifiers.org/obo.go/GO:0006402"
  R34 identity "http://identifiers.org/obo.go/GO:0006412"
  R35 identity "http://identifiers.org/obo.go/GO:0000060"
  R36 identity "http://identifiers.org/obo.go/GO:0065002"
  R37 identity "http://identifiers.org/obo.go/GO:0044257"
  R38 identity "http://identifiers.org/obo.go/GO:0044257"
  R39 identity "http://identifiers.org/obo.go/GO:0006351"
  R39 part "http://identifiers.org/obo.go/GO:0009642"
  R40 identity "http://identifiers.org/obo.go/GO:0006402"
  R41 identity "http://identifiers.org/obo.go/GO:0006412"
  R42 identity "http://identifiers.org/obo.go/GO:0000060"
  R43 identity "http://identifiers.org/obo.go/GO:0065002"
  R44 identity "http://identifiers.org/obo.go/GO:0044257"
  R45 identity "http://identifiers.org/obo.go/GO:0044257"
end

Zeilinger2006_PRR7_PRR9light_Y is "Zeilinger2006_PRR7-PRR9light-Y"

Zeilinger2006_PRR7_PRR9light_Y model_entity_is "http://identifiers.org/biomodels.db/MODEL4025634026"
Zeilinger2006_PRR7_PRR9light_Y model_entity_is "http://identifiers.org/biomodels.db/BIOMD0000000096"
Zeilinger2006_PRR7_PRR9light_Y description "http://identifiers.org/pubmed/17102803"
Zeilinger2006_PRR7_PRR9light_Y origin "http://identifiers.org/biomodels.db/BIOMD0000000055"
Zeilinger2006_PRR7_PRR9light_Y identity "http://identifiers.org/kegg.pathway/ath04710",
                                        "http://identifiers.org/obo.go/GO:0007623"
Zeilinger2006_PRR7_PRR9light_Y taxon "http://identifiers.org/taxonomy/3701"
