.gitattributes
.gitignore
.pre-commit-config.yaml
README.md
environment-dev.yml
pyproject.toml
requirements.sim.txt
requirements.test.txt
requirements.txt
setup.cfg
setup.py
.github/workflows/publish.yml
.github/workflows/test.yml
docs/design.md
docs/dsl.md
docs/features.md
docs/multilevel_dsl.md
docs/references.md
src/SimBio.egg-info/PKG-INFO
src/SimBio.egg-info/SOURCES.txt
src/SimBio.egg-info/dependency_links.txt
src/SimBio.egg-info/requires.txt
src/SimBio.egg-info/top_level.txt
src/simbio/__main__.py
src/simbio/algo.py
src/simbio/cli/models.py
src/simbio/compilers/core.py
src/simbio/compilers/numba.py
src/simbio/compilers/numpy.py
src/simbio/compilers/tests/test_parameters.py
src/simbio/compilers/tests/test_species.py
src/simbio/components/__init__.py
src/simbio/components/_builder.py
src/simbio/components/_container.py
src/simbio/components/_dsl.py
src/simbio/components/types.py
src/simbio/components/tests/test_container.py
src/simbio/components/tests/builder/test_multi_level.py
src/simbio/components/tests/builder/test_multi_level_inheritance.py
src/simbio/components/tests/builder/test_multiple_inheritance.py
src/simbio/components/tests/builder/test_reference.py
src/simbio/components/tests/builder/test_single_inheritance.py
src/simbio/components/tests/builder/test_single_level.py
src/simbio/components/tests/equality/test_reactions.py
src/simbio/components/tests/equality/test_species.py
src/simbio/components/tests/reactions/test_define_reactions.py
src/simbio/components/tests/reactions/test_equivalence.py
src/simbio/components/tests/reactions/test_reactants.py
src/simbio/models/NAMESPACE_PACKAGE
src/simbio/reactions/compound.py
src/simbio/reactions/enzymatic.py
src/simbio/reactions/single.py
src/simbio/simulator/__init__.py
src/simbio/simulator/solvers/__init__.py
src/simbio/simulator/solvers/core.py
src/simbio/simulator/solvers/scipy.py
src/simbio/tests/test_examples.py
src/simbio/tests/examples/basic.py
src/simbio/tests/examples/compartments.py
src/simbio/tests/examples/enzymatic.py