setup.py
bin/epic
bin/epic-effective
bin/epic-merge
bin/epic-overlaps
bioepic.egg-info/PKG-INFO
bioepic.egg-info/SOURCES.txt
bioepic.egg-info/dependency_links.txt
bioepic.egg-info/requires.txt
bioepic.egg-info/top_level.txt
epic/__init__.py
epic/version.py
epic/bigwig/__init__.py
epic/bigwig/create_bigwigs.py
epic/config/__init__.py
epic/config/cache_settings.py
epic/config/constants.py
epic/config/genomes.py
epic/config/logging_settings.py
epic/matrixes/__init__.py
epic/matrixes/matrixes.py
epic/run/__init__.py
epic/run/run_epic.py
epic/scripts/__init__.py
epic/scripts/bioconda_setup.py
epic/scripts/effective_genome_size.py
epic/scripts/genome.snakefile
epic/scripts/chromsizes/danRer10.chromsizes
epic/scripts/chromsizes/danRer7.chromsizes
epic/scripts/chromsizes/dm3.chromsizes
epic/scripts/chromsizes/dm6.chromsizes
epic/scripts/chromsizes/hg18.chromsizes
epic/scripts/chromsizes/hg19.chromsizes
epic/scripts/chromsizes/hg38.chromsizes
epic/scripts/chromsizes/mm10.chromsizes
epic/scripts/chromsizes/mm9.chromsizes
epic/scripts/chromsizes/rn4.chromsizes
epic/scripts/chromsizes/rn5.chromsizes
epic/scripts/chromsizes/rn6.chromsizes
epic/scripts/chromsizes/susScr2.chromsizes
epic/scripts/chromsizes/susScr3.chromsizes
epic/scripts/effective_sizes/danRer10_100.txt
epic/scripts/effective_sizes/danRer10_36.txt
epic/scripts/effective_sizes/danRer10_50.txt
epic/scripts/effective_sizes/danRer10_75.txt
epic/scripts/effective_sizes/danRer7_100.txt
epic/scripts/effective_sizes/danRer7_36.txt
epic/scripts/effective_sizes/danRer7_50.txt
epic/scripts/effective_sizes/danRer7_75.txt
epic/scripts/effective_sizes/dm3_100.txt
epic/scripts/effective_sizes/dm3_36.txt
epic/scripts/effective_sizes/dm3_50.txt
epic/scripts/effective_sizes/dm3_75.txt
epic/scripts/effective_sizes/dm6_100.txt
epic/scripts/effective_sizes/dm6_36.txt
epic/scripts/effective_sizes/dm6_50.txt
epic/scripts/effective_sizes/dm6_75.txt
epic/scripts/effective_sizes/hg18_100.txt
epic/scripts/effective_sizes/hg18_36.txt
epic/scripts/effective_sizes/hg18_50.txt
epic/scripts/effective_sizes/hg18_75.txt
epic/scripts/effective_sizes/hg19_100.txt
epic/scripts/effective_sizes/hg19_36.txt
epic/scripts/effective_sizes/hg19_50.txt
epic/scripts/effective_sizes/hg19_75.txt
epic/scripts/effective_sizes/hg38_100.txt
epic/scripts/effective_sizes/hg38_36.txt
epic/scripts/effective_sizes/hg38_50.txt
epic/scripts/effective_sizes/hg38_75.txt
epic/scripts/effective_sizes/mm10_100.txt
epic/scripts/effective_sizes/mm10_36.txt
epic/scripts/effective_sizes/mm10_50.txt
epic/scripts/effective_sizes/mm10_75.txt
epic/scripts/effective_sizes/mm9_100.txt
epic/scripts/effective_sizes/mm9_36.txt
epic/scripts/effective_sizes/mm9_50.txt
epic/scripts/effective_sizes/mm9_75.txt
epic/scripts/effective_sizes/rn4_100.txt
epic/scripts/effective_sizes/rn4_36.txt
epic/scripts/effective_sizes/rn4_50.txt
epic/scripts/effective_sizes/rn4_75.txt
epic/scripts/effective_sizes/rn5_100.txt
epic/scripts/effective_sizes/rn5_36.txt
epic/scripts/effective_sizes/rn5_50.txt
epic/scripts/effective_sizes/rn5_75.txt
epic/scripts/effective_sizes/rn6_100.txt
epic/scripts/effective_sizes/rn6_36.txt
epic/scripts/effective_sizes/rn6_50.txt
epic/scripts/effective_sizes/rn6_75.txt
epic/scripts/effective_sizes/susScr2_100.txt
epic/scripts/effective_sizes/susScr2_36.txt
epic/scripts/effective_sizes/susScr2_50.txt
epic/scripts/effective_sizes/susScr2_75.txt
epic/scripts/effective_sizes/susScr3_100.txt
epic/scripts/effective_sizes/susScr3_36.txt
epic/scripts/effective_sizes/susScr3_50.txt
epic/scripts/effective_sizes/susScr3_75.txt
epic/scripts/overlaps/__init__.py
epic/scripts/overlaps/files_to_chromosome_coverage.py
epic/scripts/overlaps/nucleotide_bargraph.py
epic/scripts/overlaps/nucleotides_heatmap.py
epic/scripts/overlaps/overlaps.py
epic/statistics/__init__.py
epic/statistics/add_to_island_expectations.py
epic/statistics/compute_background_probabilites.py
epic/statistics/compute_poisson.py
epic/statistics/compute_score_threshold.py
epic/statistics/compute_values_needed_for_recurrence.py
epic/statistics/compute_window_score.py
epic/statistics/count_to_pvalue.py
epic/statistics/fdr.py
epic/statistics/generate_cumulative_distribution.py
epic/utils/__init__.py
epic/utils/find_readlength.py
epic/utils/helper_functions.py
epic/utils/separate_input_and_chip_infiles.py
epic/windows/__init__.py
epic/windows/cluster/__init__.py
epic/windows/cluster/find_islands.py
epic/windows/count/__init__.py
epic/windows/count/count_reads_in_windows.py
epic/windows/count/merge_chromosome_dfs.py
epic/windows/count/remove_out_of_bounds_bins.py
tests/__init__.py
tests/conftest.py
tests/windows/__init__.py
tests/windows/test_count_reads_in_windows.py
tests/windows/test_merge_chromosome_dfs.py