densecall/LICENCE.txt,sha256=pi-6Sy9mkhJNBNYd6UeW2_1oD6zMxjpwVH58BOmTt00,1079
densecall/__init__.py,sha256=u8QRCp_GmMrX_pD05fklDtUJfHkGoAMRkQyEsaH99h8,997
densecall/__main__.py,sha256=HF4--u8jtYy08AwHWCYfRzfbWjoNDTho33VL2xmsOAk,65
densecall/aligner.py,sha256=56-s_w4GMH_Oin7MSCKcDhuSvfkQnXUTjT4aZwC7FYw,2962
densecall/data.py,sha256=PwyDUBOA2iySoxMzpwj0_ITEZZqxOw55LgM51EdXynA,7878
densecall/io.py,sha256=cAuLHn0CBAvQ_Vi3cTFt0qjNUblszty-7BUXhpnnUxg,36926
densecall/mod_util.py,sha256=RV__n8GhpaRUaXNeTUz_MZrTXxUED8oS6ZPz-pDGOJs,6835
densecall/multiprocessing.py,sha256=exBt58cZR6MuG-8Rj-yXDmxH8UGpK42edV-46nTBhAU,7948
densecall/reader.py,sha256=7znl_3cjltowpoFb8Kze8dSGZ8LSiEnD-j-bI8QM5lQ,8485
densecall/requirements.txt,sha256=B4CKOgi8fKFYgIaY5t_swNIH0yx0Ric-Uw5EEfyYSmM,1986
densecall/schedule.py,sha256=Y-TcTndR2Rh4Mo8X-ftkz2WlGbmmhbhj1T_7BdMD-2I,3966
densecall/training.py,sha256=Jy9xgcG0i1UlrdVByYKDG1XMaFv8H6SNmFkNhhAQroQ,27269
densecall/util.py,sha256=S99H6AjrNyUixoM99EMS8S36Ugv0k82s3kUtOlH2NUk,18431
densecall/asr/__init__.py,sha256=sSqcNKxMIJfturN7u7plXw8Rc0ebSza7E7fKnjgVgp8,202
densecall/asr/basecall.py,sha256=2rpwUYJNvtKPhv4iLj3ty4_IQuUuP7xxTFFGWmtt9V4,6838
densecall/asr/ctcdecode.py,sha256=JWwqks7B2w8AeqBmkM3bMUqgqj8O8iroEFnoZ9SAiYU,2832
densecall/asr/model.py,sha256=-v_p4y1Avswu_jSn1RGtdQhuw_8n7_3Yj2-bnKmUyZM,45540
densecall/asr/model_.py,sha256=YPvy0BqWT0fPjzYObfY3zXmXr34MfCQ_Q6Yi1XqqsDM,37768
densecall/asr/plot_attention_heatmap.py,sha256=uhaTIiIIBW8YSWVAuyUPDV4Bd0rplfblUpLZs_JunLU,3664
densecall/cli/__init__.py,sha256=8PHEfDzDAFaq4rovO9HwEeOv3P9XB8ZPKiIPJvwnX_U,129
densecall/cli/accuracy.py,sha256=GI1RFCB6_I-1zidlVeoOSnWChCUlOkyknEW8eveVZtk,10757
densecall/cli/basecaller.py,sha256=L1eAgIN4SiLRwCBMfgrmTQvOOrbNzNTGN0Tqi4eI9FM,12825
densecall/cli/classify.py,sha256=8Iom93A4R9Yz-FvzS-rilYQeqGbrIImgpWrZidhkh80,1033
densecall/cli/convert.py,sha256=I4RLacYWixeKlNKkIYNKNh4fGgsnf0iF2tJalDPu4lA,11171
densecall/cli/download.py,sha256=9Ovkmio0fKn-TCZ184PSKJ3jrPhW_yDxk5koBkpyIXI,5487
densecall/cli/lm.py,sha256=nbSkko8ny_iEudZFMBec5Qbbt9XUD9cJi9BMgz-zu6A,1562
densecall/cli/rnalm.py,sha256=WBFTuMYROHUcars1V3Ovj2WABidTWKi3HaOZbQ_52jI,1358
densecall/cli/sigmap.py,sha256=_F9YJ3ZN5t1ggnYU7z4ikJqN8BSYgNrtgswvJr0KLHY,9345
densecall/cli/to_taiyaki.py,sha256=GTDKViQIQMtf7wvIM-ehntdTHa110PFtQrVyv2v3aG0,8519
densecall/cli/train.py,sha256=J-tkmOBy_mIK6blXK9oB_g6BL0FToBJ8chaqfLpEPz4,11409
densecall/conformer/__init__.py,sha256=6BaH-OfT7a43I65IJR89ZV11FGR-ZWyuMyCwiOQlrgM,102
densecall/conformer/basecall.py,sha256=6aBpjIWZfscVH9A1HPOJZIJSEXrBPDouGgEE5Cak2as,2931
densecall/conformer/cgmlp.py,sha256=A_Bap3-CJ4m5sOy1DYKqNa6kemoqK_reKVlY9XRofog,7208
densecall/conformer/conv.py,sha256=CDUdd5n9Gatw3kwkg8TmBimEw3JAMgQxwbwUxZwToJ0,5975
densecall/conformer/criterion.py,sha256=cZRmu8rGY3e1WDm8h7oefa3j8g4WqJjTt03Qe7BGdQo,16710
densecall/conformer/flash.py,sha256=ftoDOGIHDw1NO-OrN7zDcIvv48NQyIEyku03Ji-DUZE,12338
densecall/conformer/greedy_decode.py,sha256=6PLnON_df46WRdPWQ95lqZR0ORiVqDHEmQFjrF-nhUM,2305
densecall/conformer/linformer.py,sha256=TYYa4kxXKixBhqu14YJi0hox6F-oms6F_BqXyc84zUA,5875
densecall/conformer/modcall.py,sha256=_sIJoi-guLPNj2kK9v71-gqX3d56Ilc0RydlwNIzskc,11075
densecall/conformer/model.py,sha256=H0W2oOMeNDMjUiBT4hevjSOT_2Zg1InfRjjIqggwVqY,23349
densecall/conformer/modules.py,sha256=R2D5tSCIs7mdT4IdL0FhtAO229a7cmNijvp3q1PHvn0,14225
densecall/conformer/nn.py,sha256=ZbfBlf2SXIvE5p5E-gjI5fPyE_1kBy0VUR7pjGUtAwA,17463
densecall/conformer/optimize.py,sha256=EdHIWEOhavsl6_b9HFzNLSY_Cp2HmmDbiCzVo8-DWXo,10613
densecall/conformer/reversible.py,sha256=nEeOIxwdSBiGQ7L8EcSnl5tCT0R2mkcamAjHzMnWz_0,6102
densecall/conformer/util.py,sha256=NlsPaQVc4xlHlOjzdYTexenkNgMoEgt-D1zm7uARWgE,2275
densecall/lm/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
densecall/lm/backbone.py,sha256=ptTXivLMlAnuzLVOLeWNaZt8iGeLjhaCBGlRc-jxEuk,14612
densecall/lm/lm.py,sha256=3EgAbQ5hygu8jxSgjEuo4wTQoalSUH_8RY6ClVdFQEE,49355
densecall/lm/model.py,sha256=aVyozc4I_BozS6L6CgVTFHq0jnnd6ZwLaBqn5u6mb6k,17920
densecall/lm/posttrain.py,sha256=F0_z-GhwWYTyRmrhKuYCUFOJkYcJqvr4Gw6xwdPbh_c,18219
densecall/lm/predict_genome.py,sha256=f2C8K8jUkGzUIvvZn0R8X9pSa_YDK_Bwd8XlWFiHYqU,9468
densecall/lm/pretrain.py,sha256=c31w3sG144P8vC70YPJ_Cq_gMPbDwmXvgK_ZPnditoA,16202
densecall/lm/schedule.py,sha256=Y-TcTndR2Rh4Mo8X-ftkz2WlGbmmhbhj1T_7BdMD-2I,3966
densecall/lm/utils.py,sha256=izGHDhcgWN05_flGH6s6v-BtIj1ZI4Vf_Nhmg5vXgSQ,12071
densecall/microbiome/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
densecall/microbiome/comparison.py,sha256=MPZGm0WTDbpDeuSiywTxCnlPWPCdo-EHMLiLxnHvcls,50350
densecall/microbiome/core.py,sha256=SXVsFCnXqj_uc-Jypfz2ld9JALgNNpxpZ9FGF2C_y64,28687
densecall/microbiome/evaluation.py,sha256=o8eLq8DH8pE9JAIhEMXtlmjCbOwxrCro97T-D0J94tY,30999
densecall/microbiome/gendata.py,sha256=m6o_IVF0YU0G2dq4fnjO-W22wvY0_qudkaUdDVxvksM,7990
densecall/microbiome/genome_sampling.py,sha256=5LGDiGptZ6qOtOAoYKsmMj34VmE1CFLPPxSkknjI25o,6069
densecall/microbiome/label.py,sha256=Fz-8zJD-ow4aw8hnbgKWPS1lxo2vJtCqH7x2IRsfHSE,2314
densecall/microbiome/model.py,sha256=pdg0gfK-NGkJw896q1FfTJg6ONb-QYRws6-trqn8pUg,5648
densecall/microbiome/precision.py,sha256=wrkHAaA8lyGTh8rWEM7-SemhgINXm6dUDd8WDOXUs7g,7922
densecall/microbiome/predict.py,sha256=DpM0RhNY-8CoVWTu1rDEa51EPI3nrbTrv95NZ-q2hzA,9684
densecall/microbiome/split.py,sha256=N8w-7kMwJVWMyvRhRAaT7dHJzpz5SDigr5siH3Yu36g,3021
densecall/microbiome/train.py,sha256=NbORnJv_HSel9zKW7tJUlqzComeAUMnC8UnVN_zGHiA,17840
densecall/microbiome/utils.py,sha256=bJYKsQpDpXRp8b5i5lvLvsZUdsanWz7ye9aszo9dzb4,14594
densecall/models/configs/conformer.toml,sha256=obdPlhTeWpBaKeZzbX2BhYEtD7-SepUnQvvSEJMhzK8,770
densecall/models/configs/conformer_rna.toml,sha256=Qvm3KciyQmorIbDI-aH9V7AqW9vS69POV_jFI6pQiNw,768
densecall/models/configs/hybrid_transformer.toml,sha256=QnaDuKGz0zASSrLgebaCRGBME28Po9BW-kDFC3PH4-8,1104
densecall/models/configs/hybrid_transformer_dna.toml,sha256=yjrDV27B-Z54HwtVRWwnCnBcn5QZ-pXIJCJoIP4DBrE,1104
densecall/rnalm/__init__.py,sha256=36NVzjktx6uEThy7B6392aaP3EhsWCfHSGFrb1i9-KM,134
densecall/rnalm/analysis.py,sha256=nWhPSB5zIzrScGwzcNhkyUwW4iqjOWfF90SxacaMtsI,38885
densecall/rnalm/backbone.py,sha256=yu4P-WEIxXjT0oQIJg9amX6fXaZMrCpH8HFvOqX6Ogc,14691
densecall/rnalm/data_maker.py,sha256=b02qnWV0xbN_9cbeuBWb60IzUPyabz26e3MZSnZdaWg,16638
densecall/rnalm/data_maker_m6a.py,sha256=Ho44dWhcxlFgWMeuKAxBC8NSd9KJ26b6qF0a0vKaGH8,21231
densecall/rnalm/lmy.py,sha256=qDL0MS5fHmMUIc9gROCeSPyDeSLtjqA1dOeVbPiye_E,21758
densecall/rnalm/model.py,sha256=jDh-8ChmTEzr94MMMqo3tAzAjWwbNf5TTwwNnghFMqc,20350
densecall/rnalm/schedule.py,sha256=Y-TcTndR2Rh4Mo8X-ftkz2WlGbmmhbhj1T_7BdMD-2I,3966
densecall/rnalm/train_splice_m6a.py,sha256=0fNQwYzkJIZwxA4-UPshbvgJUrSNF09LrBcWip_NzIE,28656
densecall/rnalm/utils.py,sha256=izGHDhcgWN05_flGH6s6v-BtIj1ZI4Vf_Nhmg5vXgSQ,12071
densecall/scripts/m6a_benchmark_complete.py,sha256=5WPWznTK3pH3ZExFIHwbAJ6fMrTKvSC_zCK7aoG_OBI,50388
densecall/scripts/plot_m6a_comparison.py,sha256=EohrHEU9qnmYBoqAdoNRvtzTUpEbeIt6unTqPKjEGVs,28858
densecall-0.0.2.9.9.dist-info/METADATA,sha256=BgOO3b2me6ZdJfN77rhVeCSXRGR7IAv9TvjkwHarP5U,27884
densecall-0.0.2.9.9.dist-info/WHEEL,sha256=YVMoNqKzERt-wjUZwJ33xBGAwnFl-4cqbYkTtWa4itE,91
densecall-0.0.2.9.9.dist-info/entry_points.txt,sha256=lJRLv3KtY0MVwvnFSwvN7VoBg_HXgTVf4pt8gaulKlo,45
densecall-0.0.2.9.9.dist-info/top_level.txt,sha256=tOQwbk24tbl8GFtGWYDc0hrKvwbsZP_TF_v2Wi4YpRM,10
densecall-0.0.2.9.9.dist-info/RECORD,,
