LICENSE
MANIFEST.in
README.md
setup.py
src/bifidotyper/__init__.py
src/bifidotyper/cli.py
src/bifidotyper/hmo_genes.py
src/bifidotyper/logger.py
src/bifidotyper/plotting.py
src/bifidotyper/processor.py
src/bifidotyper/references.py
src/bifidotyper/sylph.py
src/bifidotyper.egg-info/PKG-INFO
src/bifidotyper.egg-info/SOURCES.txt
src/bifidotyper.egg-info/dependency_links.txt
src/bifidotyper.egg-info/entry_points.txt
src/bifidotyper.egg-info/requires.txt
src/bifidotyper.egg-info/top_level.txt
src/bifidotyper/data/bin/sylph_aarch64-any-linux
src/bifidotyper/data/bin/sylph_arm64-any-darwin
src/bifidotyper/data/bin/sylph_x86_64-any-darwin
src/bifidotyper/data/bin/sylph_x86_64-any-linux
src/bifidotyper/data/reference/CP001095.1_coding_seqs.gb
src/bifidotyper/data/reference/CP001095.1_gene_sequences.fasta
src/bifidotyper/data/reference/CP001095.1_genes.bed
src/bifidotyper/data/reference/CP001095.1_genes.gff3
src/bifidotyper/data/reference/CP001095.1_genome.fasta
src/bifidotyper/data/reference/CP001095.1_genome.fasta.fai
src/bifidotyper/data/reference/bifidobacteria_sketches.syldb
src/bifidotyper/data/reference/bifidotyper_graphical_abstract.png
src/bifidotyper/data/reference/genomes.csv
src/bifidotyper/data/reference/get_gene_sequences.sh
src/bifidotyper/data/reference/humann2_HMO_annotation.csv