README.md
setup.cfg
setup.py
XYalign.egg-info/PKG-INFO
XYalign.egg-info/SOURCES.txt
XYalign.egg-info/dependency_links.txt
XYalign.egg-info/entry_points.txt
XYalign.egg-info/requires.txt
XYalign.egg-info/top_level.txt
xyalign/__init__.py
xyalign/__main__.py
xyalign/_version.py
xyalign/assemble.py
xyalign/bam.py
xyalign/ploidy.py
xyalign/reftools.py
xyalign/utils.py
xyalign/variants.py
xyalign/xyalign.py
xyalign/test/__init__.py
xyalign/test/test_assemble.py
xyalign/test/test_bam.py
xyalign/test/test_ploidy.py
xyalign/test/test_reftools.py
xyalign/test/test_utils.py
xyalign/test/test_variants.py
xyalign/test/test_xyalign.py