Metadata-Version: 2.4
Name: vaxcompiler
Version: 0.1.0
Summary: Patient-specific compilation of tumor mutations into optimized multi-antigen mRNA vaccine architectures.
Author: Seungik Cho
License-Expression: MIT
Requires-Python: >=3.11
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy>=1.26
Requires-Dist: pandas>=2.0
Requires-Dist: scipy>=1.11
Provides-Extra: mhc
Requires-Dist: mhcflurry>=2.2.1; extra == "mhc"
Provides-Extra: dev
Requires-Dist: pytest>=8; extra == "dev"
Requires-Dist: build>=1.2; extra == "dev"
Requires-Dist: twine>=5; extra == "dev"
Dynamic: license-file

# VaxCompiler

**Patient-specific compilation of tumor mutations into optimized multi-antigen mRNA vaccine architectures.**

VaxCompiler is open-source research software for computational personalized cancer vaccine design.

Rather than treating mutation selection, transcript partitioning, and antigen ordering as independent steps, VaxCompiler formulates vaccine architecture design as a constrained combinatorial compilation problem.

## Status

Research software. Not intended for clinical use.

Current antigen-presentation and antigen-utility objectives are computational surrogates and must not be interpreted as validated clinical immunogenicity or vaccine efficacy.

## Development installation

    pip install -e .

## CLI

    vaxcompiler --version
    vaxcompiler --help
