.gitattributes
.gitignore
CITATION.cff
LICENSE
MANIFEST.in
README.md
mkdocs.yml
pyproject.toml
uv.lock
.github/workflows/deploy.yml
.github/workflows/publish.yml
docs/citing.md
docs/examples.md
docs/index.md
docs/logo.ico
docs/assets/extra.css
docs/assets/images/demo_napari_screenshot.png
docs/assets/images/gaussian_result.png
docs/assets/images/meta_sc.png
docs/assets/images/napari_widget.png
docs/assets/images/samples_sc.png
docs/assets/images/screenshot_napari_threshold.png
docs/assets/images/screenshot_server.png
docs/assets/images/server_running.png
docs/assets/images/threshold_qubalab.png
docs/assets/videos/auto_call.mp4
docs/assets/videos/cellpose_example.mp4
docs/assets/videos/oripy_threshold.mp4
docs/assets/videos/progressive_threshold.mp4
docs/assets/videos/server_napari.mp4
docs/assets/videos/tiles.mp4
docs/assets/videos/tiling2.mp4
docs/assets/videos/yolo-stream.mp4
docs/concepts/algorithms.md
docs/concepts/coordinates.md
docs/concepts/layers-and-stacks.md
docs/developers/ai_policy.md
docs/getting-started/demos.md
docs/getting-started/installation.md
docs/hooks/redirects.py
docs/how-to/combine.md
docs/how-to/deploy-server.md
docs/how-to/live-updates.md
docs/how-to/napari.md
docs/how-to/qupath.md
docs/how-to/regions.md
docs/how-to/tiling.md
docs/reference/cli.md
docs/reference/http.md
docs/reference/api/algorithms.md
docs/reference/api/gui.md
docs/reference/api/layers.md
docs/reference/api/remote.md
docs/reference/api/stack.md
docs/tutorial/create-algorithm.md
docs/tutorial/python.md
docs/tutorial/samples-and-metadata.md
docs/tutorial/serve.md
examples/readme.md
src/imaging_server_kit/__init__.py
src/imaging_server_kit/_version.py
src/imaging_server_kit/cli.py
src/imaging_server_kit.egg-info/PKG-INFO
src/imaging_server_kit.egg-info/SOURCES.txt
src/imaging_server_kit.egg-info/dependency_links.txt
src/imaging_server_kit.egg-info/entry_points.txt
src/imaging_server_kit.egg-info/requires.txt
src/imaging_server_kit.egg-info/scm_file_list.json
src/imaging_server_kit.egg-info/scm_version.json
src/imaging_server_kit.egg-info/top_level.txt
src/imaging_server_kit/core/__init__.py
src/imaging_server_kit/core/_etc.py
src/imaging_server_kit/core/_fmt.py
src/imaging_server_kit/core/_progress_display.py
src/imaging_server_kit/core/algorithm.py
src/imaging_server_kit/core/domain.py
src/imaging_server_kit/core/errors.py
src/imaging_server_kit/core/multialgo.py
src/imaging_server_kit/core/runner.py
src/imaging_server_kit/core/stack.py
src/imaging_server_kit/core/tiling.py
src/imaging_server_kit/core/static/css/index.css
src/imaging_server_kit/core/static/css/info.css
src/imaging_server_kit/core/templates/index.html
src/imaging_server_kit/core/templates/info.html
src/imaging_server_kit/demo/__init__.py
src/imaging_server_kit/demo/examples.py
src/imaging_server_kit/demo/tools.py
src/imaging_server_kit/demo/sample_images/blobs.tif
src/imaging_server_kit/demo/sample_images/tracks.tif
src/imaging_server_kit/gui/__init__.py
src/imaging_server_kit/gui/common/__init__.py
src/imaging_server_kit/gui/common/parameter_panel.py
src/imaging_server_kit/gui/common/runner_widget.py
src/imaging_server_kit/gui/common/task_manager.py
src/imaging_server_kit/gui/napari_serverkit/__init__.py
src/imaging_server_kit/gui/napari_serverkit/extra_widgets.py
src/imaging_server_kit/gui/napari_serverkit/napari.yaml
src/imaging_server_kit/gui/napari_serverkit/napari_http_widget.py
src/imaging_server_kit/gui/napari_serverkit/napari_stack.py
src/imaging_server_kit/gui/napari_serverkit/napari_widget.py
src/imaging_server_kit/gui/qupath_serverkit/__init__.py
src/imaging_server_kit/gui/qupath_serverkit/qupath_bridge.py
src/imaging_server_kit/gui/qupath_serverkit/qupath_http_widget.py
src/imaging_server_kit/gui/qupath_serverkit/qupath_widget.py
src/imaging_server_kit/merge/__init__.py
src/imaging_server_kit/merge/_image_merger.py
src/imaging_server_kit/merge/_mask_merger.py
src/imaging_server_kit/merge/_object_merger.py
src/imaging_server_kit/merge/common.py
src/imaging_server_kit/merge/layer_merger.py
src/imaging_server_kit/merge/merger.py
src/imaging_server_kit/remote/__init__.py
src/imaging_server_kit/remote/_any_serializer.py
src/imaging_server_kit/remote/_boxes_serializer.py
src/imaging_server_kit/remote/_image_serializer.py
src/imaging_server_kit/remote/_mask_serializer.py
src/imaging_server_kit/remote/_null_serializer.py
src/imaging_server_kit/remote/_paths_serializer.py
src/imaging_server_kit/remote/_points_serializer.py
src/imaging_server_kit/remote/_tracks_serializer.py
src/imaging_server_kit/remote/_vectors_serializer.py
src/imaging_server_kit/remote/app.py
src/imaging_server_kit/remote/client.py
src/imaging_server_kit/remote/encoding.py
src/imaging_server_kit/remote/layer_serializer.py
src/imaging_server_kit/remote/meta_serializer.py
src/imaging_server_kit/remote/serializer.py
src/imaging_server_kit/remote/stack_serializer.py
src/imaging_server_kit/remote/tile_serializer.py
src/imaging_server_kit/skills/isk-napari-qupath-gui/SKILL.md
src/imaging_server_kit/skills/isk-write-algorithm/SKILL.md
src/imaging_server_kit/types/__init__.py
src/imaging_server_kit/types/_any.py
src/imaging_server_kit/types/_bool.py
src/imaging_server_kit/types/_boxes.py
src/imaging_server_kit/types/_choice.py
src/imaging_server_kit/types/_float.py
src/imaging_server_kit/types/_image.py
src/imaging_server_kit/types/_integer.py
src/imaging_server_kit/types/_mask.py
src/imaging_server_kit/types/_notification.py
src/imaging_server_kit/types/_null.py
src/imaging_server_kit/types/_paths.py
src/imaging_server_kit/types/_points.py
src/imaging_server_kit/types/_progress.py
src/imaging_server_kit/types/_string.py
src/imaging_server_kit/types/_tracks.py
src/imaging_server_kit/types/_vectors.py
src/imaging_server_kit/types/common.py
src/imaging_server_kit/types/layer.py
src/imaging_server_kit/validation/__init__.py
src/imaging_server_kit/validation/_boxes_validator.py
src/imaging_server_kit/validation/_image_validator.py
src/imaging_server_kit/validation/_mask_validator.py
src/imaging_server_kit/validation/_points_validator.py
src/imaging_server_kit/validation/_vectors_validator.py
src/imaging_server_kit/validation/layer_validator.py
src/imaging_server_kit/validation/validator.py
tests/test_cli.py
tests/test_docs.py
tests/core/test_basic.py
tests/core/test_description.py
tests/core/test_errors.py
tests/core/test_indexing.py
tests/core/test_multialgo.py
tests/core/test_repr.py
tests/core/test_results.py
tests/core/test_streaming.py
tests/core/test_tiled_runs.py
tests/core/test_tiling.py
tests/demo/test_examples.py
tests/demo/test_tools.py
tests/gui/test_napari_stack.py
tests/merge/test_merging.py
tests/remote/test_app.py
tests/remote/test_client_server.py
tests/remote/test_serialization.py
tests/sample_images/blobs.tif
tests/types/test_mask.py