.DS_Store
.codecov.yml
.coveragerc
.flake8
.gitattributes
.gitignore
.isort.cfg
LICENSE
MANIFEST.in
README.rst
github_deploy_key_nsls_ii_pyxrf.enc
pyproject.toml
requirements-dev.txt
requirements-docs.txt
requirements.txt
run_tests.py
setup.cfg
setup.py
versioneer.py
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE.md
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/black.yml
.github/workflows/docs.yml
.github/workflows/docs_publish.yml
.github/workflows/flake8.yml
.github/workflows/isort.yml
.github/workflows/python-publish.yml
.github/workflows/testing.yml
configs/.DS_Store
configs/__init__.py
configs/hxn_pv_config.json
configs/pv_config.json
configs/srx_pv_config-original.json
configs/srx_pv_config.json
configs/tes_pv_config.json
configs/xfm_pv_config.json
configs/xrf_parameter.json
docs/Makefile
docs/make.bat
docs/source/conf.py
docs/source/credits.rst
docs/source/data_input.rst
docs/source/data_output.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/questions.rst
docs/source/release-notes.rst
docs/source/summed_spectrum_fit.rst
docs/source/work_at_beamlines.rst
docs/source/_static/define_h5file.jpg
docs/source/_static/define_h5file.pdf
docs/source/_static/define_h5file.png
docs/source/_static/load_parameter_file.png
docs/source/_static/more_datasets.png
docs/source/_static/select_data_plot.png
docs/source/_static/zoomin_plot.png
examples/Batch_mode_fit.ipynb
examples/Batch_mode_fit_for_APS-2IDE-Bionanoprobe_data.ipynb
examples/Spectrum_plot_with_given_area.ipynb
examples/batch_mode_fit_AND_combine_data_for_recon.ipynb
examples/combine_data_for_reconstruction.ipynb
examples/compare_ROI_sum_and_fit.ipynb
examples/get_concentration.ipynb
examples/make_hdf_stitched_function.ipynb
examples/output_data_to_hdf.ipynb
examples/specfile_to_hdf.ipynb
examples/stitch_fitted_results.ipynb
examples/summed_spectrum_fit.ipynb
examples/data/background_11564ev.json
examples/data/film_11564ev_all.json
examples/data/film_25000ev_all.json
examples/data/root.json
examples/data/root_all.json
pyxrf/__init__.py
pyxrf/_version.py
pyxrf/api.py
pyxrf/api_dev.py
pyxrf/pyxrf_run.py
pyxrf.egg-info/PKG-INFO
pyxrf.egg-info/SOURCES.txt
pyxrf.egg-info/dependency_links.txt
pyxrf.egg-info/entry_points.txt
pyxrf.egg-info/requires.txt
pyxrf.egg-info/top_level.txt
pyxrf/core/__init__.py
pyxrf/core/dask_h5py_serializers.py
pyxrf/core/fitting.py
pyxrf/core/map_processing.py
pyxrf/core/quant_analysis.py
pyxrf/core/utils.py
pyxrf/core/xrf_quant_standards.yaml
pyxrf/core/xrf_utils.py
pyxrf/core/yaml_param_files.py
pyxrf/core/tests/__init__.py
pyxrf/core/tests/test_fitting.py
pyxrf/core/tests/test_map_processing.py
pyxrf/core/tests/test_quant_analysis.py
pyxrf/core/tests/test_xrf_utils.py
pyxrf/core/tests/test_yaml_param_files.py
pyxrf/db_config/__init__.py
pyxrf/db_config/hxn_db_config.py
pyxrf/db_config/srx_db_config.py
pyxrf/db_config/tes_db_config.py
pyxrf/db_config/xfm_db_config.py
pyxrf/gui_module/__init__.py
pyxrf/gui_module/central_widget.py
pyxrf/gui_module/dlg_edit_user_peak_parameters.py
pyxrf/gui_module/dlg_export_to_tiff_and_txt.py
pyxrf/gui_module/dlg_find_elements.py
pyxrf/gui_module/dlg_load_mask.py
pyxrf/gui_module/dlg_new_user_peak.py
pyxrf/gui_module/dlg_pileup_peak_parameters.py
pyxrf/gui_module/dlg_plot_escape_peak.py
pyxrf/gui_module/dlg_save_calibration.py
pyxrf/gui_module/dlg_select_quant_standard.py
pyxrf/gui_module/dlg_select_scan.py
pyxrf/gui_module/dlg_view_calib_standard.py
pyxrf/gui_module/dlg_view_metadata.py
pyxrf/gui_module/form_base_widget.py
pyxrf/gui_module/left_panel.py
pyxrf/gui_module/main_window.py
pyxrf/gui_module/right_panel.py
pyxrf/gui_module/tab_wd_fit_maps.py
pyxrf/gui_module/tab_wd_load_data.py
pyxrf/gui_module/tab_wd_model.py
pyxrf/gui_module/tab_wd_plots_fitting_model.py
pyxrf/gui_module/tab_wd_plots_preview.py
pyxrf/gui_module/tab_wd_plots_rgb_maps.py
pyxrf/gui_module/tab_wd_plots_xrf_maps.py
pyxrf/gui_module/useful_widgets.py
pyxrf/gui_module/wd_preview_plot_count.py
pyxrf/gui_module/wd_preview_plot_spectrum.py
pyxrf/gui_module/wd_rgb_selection.py
pyxrf/gui_module/wnd_compute_roi_maps.py
pyxrf/gui_module/wnd_detailed_fitting_params.py
pyxrf/gui_module/wnd_general_settings_for_fitting.py
pyxrf/gui_module/wnd_image_wizard.py
pyxrf/gui_module/wnd_load_quant_calibration.py
pyxrf/gui_module/wnd_manage_emission_lines.py
pyxrf/gui_module/tests/__init__.py
pyxrf/gui_module/tests/test_main_window.py
pyxrf/gui_module/tests/test_useful_widgets.py
pyxrf/gui_module/tests/test_wd_image_wizard.py
pyxrf/gui_module/tests/test_wd_load_data.py
pyxrf/gui_module/tests/test_wnd_load_quant_calibration.py
pyxrf/gui_module/tests/test_wnd_manage_emission_lines.py
pyxrf/gui_support/__init__.py
pyxrf/gui_support/gpc_class.py
pyxrf/gui_support/tests/__init__.py
pyxrf/gui_support/tests/test_gpc_class.py
pyxrf/model/__init__.py
pyxrf/model/catalog_management.py
pyxrf/model/command_tools.py
pyxrf/model/data_to_analysis_store.py
pyxrf/model/draw_image.py
pyxrf/model/draw_image_rgb.py
pyxrf/model/fileio.py
pyxrf/model/fit_spectrum.py
pyxrf/model/lineplot.py
pyxrf/model/load_data_from_db.py
pyxrf/model/param_data.py
pyxrf/model/parameters.py
pyxrf/model/roi_model.py
pyxrf/model/scan_metadata.py
pyxrf/model/tests/__init__.py
pyxrf/model/tests/test_hdf5_file_operations.py
pyxrf/simulation/__init__.py
pyxrf/simulation/sim_xrf_scan_data.py
pyxrf/simulation/tests/test_sim_xrf_scan_data.py
pyxrf/xanes_maps/__init__.py
pyxrf/xanes_maps/xanes_maps_api.py
pyxrf/xanes_maps/tests/test_xanes_maps_api.py