Metadata-Version: 2.4
Name: embkit
Version: 0.1.0
Summary: Embedding Kit for embedding models
Author-email: Kyle Ellrott <ellrott@ohsu.edu>, Raphael Kirchgaessner <kirchgae@ohsu.edu>
License: MIT
Keywords: embeddings,machine learning,deep learning
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Requires-Dist: torch>=2.0
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: click
Requires-Dist: scikit-learn


# Embedding Kit

Methods for data normalizatio, embedding, synthesis and transformation


## Installation
```
python setup.py build
python setup.py install
```

# Training a model
```
python -m embkit model train ./experiments/tcga/tumor.normalized.tsv --epochs 120
```




## Notebook cleaning

To avoid checking in large notebooks with lots of intermediate figures, please follow the instructions at https://gist.github.com/33eyes/431e3d432f73371509d176d0dfb95b6e


Running build

