from IPython.display import display
from pkdb_analysis import PKFilter, PKFilterFactory, PKData, PKDB
import pandas as pd

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ImportError                               Traceback (most recent call last)

<ipython-input-1-9779cd9ede1f> in <module>
      2 get_ipython().run_line_magic('autoreload', '2')
      3 from IPython.display import display
----> 4 from pkdb_analysis import PKFilter, PKFilterFactory, PKData, PKDB
      5 import pandas as pd


ImportError: cannot import name 'PKFilterFactory' from 'pkdb_analysis' (/home/janek/Dev/pkdb_analysis/src/pkdb_analysis/__init__.py)

Curation and checking of studies

Helpers for simple checking of curated results.

# get data for study
study_name = "Test1"
pkfilter = PKFilterFactory.by_study_name(study_name)
data = PKDB.query(pkfilter=pkfilter)
print(data)

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NameError                                 Traceback (most recent call last)

<ipython-input-1-ea6e6bd278a7> in <module>
      1 # get data for study
      2 study_name = "Test1"
----> 3 pkfilter = PKFilterFactory.by_study_name(study_name)
      4 data = PKDB.query(pkfilter=pkfilter)
      5 print(data)


NameError: name 'PKFilterFactory' is not defined

Explore data content

print(data.groups.pks)
print(data.individuals.pks)

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NameError                                 Traceback (most recent call last)

<ipython-input-1-21704facd3df> in <module>
----> 1 print(data.groups.pks)
      2 print(data.individuals.pks)


NameError: name 'data' is not defined

with pd.option_context('display.max_rows', None, 'display.max_columns', None):
    display(data.groups_mi)
    display(data.individuals_mi)
    display(data.interventions_mi)
    display(data.outputs_mi)
    display(data.timecourses_mi)

---------------------------------------------------------------------------

NameError                                 Traceback (most recent call last)

<ipython-input-1-b5f98a7f64fd> in <module>
----> 1 with pd.option_context('display.max_rows', None, 'display.max_columns', None):
      2     display(data.groups_mi)
      3     display(data.individuals_mi)
      4     display(data.interventions_mi)
      5     display(data.outputs_mi)


NameError: name 'pd' is not defined

data.timecourses

---------------------------------------------------------------------------

NameError                                 Traceback (most recent call last)

<ipython-input-1-2fde804e136a> in <module>
----> 1 data.timecourses


NameError: name 'data' is not defined

data.timecourses

---------------------------------------------------------------------------

NameError                                 Traceback (most recent call last)

<ipython-input-1-0d2b1d8dbe58> in <module>
----> 1 data.timecourses
      2


NameError: name 'data' is not defined