Metadata-Version: 2.1
Name: SalmonEuAdmix
Version: 1.0.6
Summary: Estimating European admixture proportions in Atlantic salmon
Home-page: https://github.com/CNuge/SalmonEuAdmix
Author: Cam Nugent
Author-email: Cameron.Nugent@dfo-mpo.gc.ca
License: LICENSE.md
Requires-Python: >=3.9.7
License-File: LICENCE.md
Requires-Dist: numpy (>=1.20.3)
Requires-Dist: pandas (>=1.3.4)
Requires-Dist: tensorflow (>=2.8.0)
Requires-Dist: scikit-learn (>=0.24.2)
Requires-Dist: pytest (==6.2.4)


SalmonEuAdmix: a machine learning-based library for estimating European admixture proportions in Atlantic salmon. 

SalmonEuAdmix is a program designed to streamline the admixture estimation process, 
and allow for European admixture proporions to be accurately estimated from a 
parsimonious set of SNP markers. Relying exlusively on the genotypes for the set 
of SNPs as input, SalmonEuAdmix can predict admixture proporions for novel samples. 
The program utilizes a machine-learning model trained on pairs of genotypes and 
admixture proportions for 5812 individuals encompassing a mixture of wild and 
aquaculture fish of European, North American, and mixed ancestry. The model has 
been experimentally show to predict admixture proportions that conform to the 
estimations provided by a complete admixture analysis with greater than 98 percent accuracy.