LICENSE
MANIFEST.in
README.md
setup.py
IRTools/.DS_Store
IRTools/Constants.py
IRTools/Constants.pyc
IRTools/__init__.py
IRTools/__init__.pyc
IRTools/annotation_cmd.py
IRTools/annotation_cmd.pyc
IRTools/diff_cmd.py
IRTools/quant_IRC.py
IRTools/quant_IRI.py
IRTools/quant_cmd.py
IRTools/quant_cmd.pyc
IRTools.egg-info/PKG-INFO
IRTools.egg-info/SOURCES.txt
IRTools.egg-info/dependency_links.txt
IRTools.egg-info/requires.txt
IRTools.egg-info/top_level.txt
IRTools/data/.DS_Store
IRTools/data/hg19_IR_annotation.gtf.gz
IRTools/data/mm9_IR_annotation.gtf.gz
IRTools/utility/.DS_Store
IRTools/utility/RSeQC-2.6.2/MANIFEST.in
IRTools/utility/RSeQC-2.6.2/PKG-INFO
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IRTools/utility/RSeQC-2.6.2/src/binBits.h
IRTools/utility/RSeQC-2.6.2/src/cluster.c
IRTools/utility/RSeQC-2.6.2/src/cluster.h
IRTools/utility/RSeQC-2.6.2/src/pwm_utils.c
IRTools/utility/RSeQC-2.6.2/src/pwm_utils.h
IRTools/utility/RSeQC-2.6.2/src/bunzip/micro-bunzip.c
IRTools/utility/RSeQC-2.6.2/src/bunzip/micro-bunzip.h
IRTools/utility/RSeQC-2.6.2/src/kent/bits.c
IRTools/utility/RSeQC-2.6.2/src/kent/bits.h
IRTools/utility/RSeQC-2.6.2/src/kent/common.c
IRTools/utility/RSeQC-2.6.2/src/kent/common.h
IRTools/utility/RSeQC-2.6.2/src/samtools/bgzf.c
IRTools/utility/RSeQC-2.6.2/src/samtools/bgzf.h
IRTools/utility/RSeQC-2.6.2/src/samtools/khash.h
IRTools/utility/rMATS/FDR.py
IRTools/utility/rMATS/GLM_MS_paired.py
IRTools/utility/rMATS/GLM_MS_unpaired.py
IRTools/utility/rMATS/MATS_LRT.py
IRTools/utility/rMATS/MATS_LRT.sh
IRTools/utility/rMATS/check_input.py
IRTools/utility/rMATS/getGeneExpr.GTF.SAM.py
IRTools/utility/rMATS/inclusion_level.py
IRTools/utility/rMATS/rMATS.sh
IRTools/utility/rMATS/rMATS_Paired.sh
IRTools/utility/rMATS/rMATS_Unpaired.sh
bin/IRTools