CHANGELOG.md
GVCF.md
LICENSE
MANIFEST.in
PUBLISHING.md
README.md
SCN5A.md
VALIDATION.txt
pyproject.toml
examples/panel.tsv
examples/trio.vcf
examples/unfazed.vcf
examples/gvcf/README.md
examples/gvcf/all-sites.vcf
examples/gvcf/child.vcf
examples/gvcf/father.vcf
examples/gvcf/joint.vcf
examples/gvcf/mother.vcf
examples/gvcf/panel.tsv
examples/individual/child.vcf
examples/individual/father.vcf
examples/individual/mother.vcf
reference-data/scn5a-promoter-pangenome/CITATION.cff
reference-data/scn5a-promoter-pangenome/LICENSE
reference-data/scn5a-promoter-pangenome/README.md
reference-data/scn5a-promoter-pangenome/config/config.yaml
reference-data/scn5a-promoter-pangenome/results/provenance.yaml
reference-data/scn5a-promoter-pangenome/results/tables/haplotype_assignments.core.tsv
reference-data/scn5a-promoter-pangenome/results/tables/haplotype_matrix.core.tsv
reference-data/scn5a-promoter-pangenome/results/tables/haplotypes.core.tsv
reference-data/scn5a-promoter-pangenome/results/tables/summary.core.json
reference-data/scn5a-promoter-pangenome/results/tables/variant_sites.core.tsv
scn5a-panel/audit.json
scn5a-panel/catalogue.json
scn5a-panel/markers.snps.bed
scn5a-panel/panel.snps.tsv
scn5a-panel/validation.json
scripts/validate_distribution.py
scripts/validate_gvcf.py
scripts/validate_synthetic.py
tests/test_catalogue.py
tests/test_gvcf.py
tests/test_individual_vcfs.py
tests/test_inference.py
tests/test_origin.py
tests/test_source_provenance.py
triohap/__init__.py
triohap/__main__.py
triohap/catalogue.py
triohap/catalogue_plot.py
triohap/cli.py
triohap/core.py
triohap/gvcf.py
triohap/origin.py
triohap/report.py
triohap/vcf.py
triohap.egg-info/PKG-INFO
triohap.egg-info/SOURCES.txt
triohap.egg-info/dependency_links.txt
triohap.egg-info/entry_points.txt
triohap.egg-info/requires.txt
triohap.egg-info/top_level.txt
validation/gvcf_summary.json
validation/synthetic_summary.json