.gitignore
CHANGELOG.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
setup.py
context_explorer/__init__.py
context_explorer/cluster_cells.py
context_explorer/colony_overlays.py
context_explorer/data_processing.py
context_explorer/intensity_distributions.py
context_explorer/main.py
context_explorer/plot_colonies.py
context_explorer/visual_clustering.py
context_explorer.egg-info/PKG-INFO
context_explorer.egg-info/SOURCES.txt
context_explorer.egg-info/dependency_links.txt
context_explorer.egg-info/entry_points.txt
context_explorer.egg-info/requires.txt
context_explorer.egg-info/top_level.txt
context_explorer/gui/ContextExplorerDesign.ui
context_explorer/gui/VisualClusteringGUI.ui
context_explorer/gui/__init__.py
context_explorer/gui/context_explorer_design.py
context_explorer/gui/mplwidget.py
context_explorer/gui/visual_clustering_gui.py
doc/Makefile
doc/conf.py
doc/index.rst
doc/make.bat
icon/ce-icon-keep-white.ico
icon/ce-icon-keep-white.png
sample-data/ce-sample.csv