.gitignore
LICENSE
README.md
pyproject.toml
setup.cfg
.ipynb_checkpoints/__init__-checkpoint.py
cell_AAP/__init__.py
cell_AAP/configs.py
cell_AAP/defaults.py
cell_AAP/napari.yaml
cell_AAP.egg-info/PKG-INFO
cell_AAP.egg-info/SOURCES.txt
cell_AAP.egg-info/dependency_links.txt
cell_AAP.egg-info/entry_points.txt
cell_AAP.egg-info/requires.txt
cell_AAP.egg-info/top_level.txt
cell_AAP/annotation/__init__.py
cell_AAP/annotation/annotation_utils.py
cell_AAP/annotation/annotator.py
cell_AAP/annotation/dataset_convert.py
cell_AAP/annotation/dataset_write.py
cell_AAP/annotation/pycococreator/__init__.py
cell_AAP/annotation/pycococreator/pycococreatortools/__init__.py
cell_AAP/annotation/pycococreator/pycococreatortools/pycococreatortools.py
cell_AAP/core/__init__.py
cell_AAP/core/inference_core.py
cell_AAP/napari/__init__.py
cell_AAP/napari/fileio.py
cell_AAP/napari/main.py
cell_AAP/napari/sub_widgets.py
cell_AAP/napari/ui.py
cell_AAP/napari_dataset/__init__.py
cell_AAP/napari_dataset/combined.py
cell_AAP/napari_dataset/config_editor.py
cell_AAP/napari_dataset/fileio.py
cell_AAP/napari_dataset/main.py
cell_AAP/napari_dataset/napari.yaml
cell_AAP/napari_dataset/results_viewer.py
cell_AAP/napari_dataset/simple_coco_convert.py
cell_AAP/napari_dataset/ui.py
cell_AAP/napari_dataset/zenodo_uploader.py
cell_AAP/scripts/batch_inference.py
cell_AAP/scripts/inference.py
cell_AAP/scripts/run_inference.py
embeddings/hela.npy
images/fig_1.png
images/figure2.png
images/ht1080.png
images/rpe1_u2os.png
metrics/metricdf_HeLa.npy
metrics/metriclabels_HeLa.npy
notebooks/example_HT1080.ipynb
notebooks/example_HeLa.ipynb
notebooks/example_U2OS.ipynb
notebooks/tutorials/dataset_generation/example.ipynb
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notebooks/tutorials/dataset_generation/20250429-cellapp-data/20250429_HeLa-Rpe1-cellapp-data_A01_s10_phs.tif
notebooks/tutorials/dataset_generation/20250429-cellapp-data/20250429_HeLa-Rpe1-cellapp-data_A01_s11_Texas Red.tif
notebooks/tutorials/dataset_generation/20250429-cellapp-data/20250429_HeLa-Rpe1-cellapp-data_A01_s11_phs.tif
notebooks/tutorials/dataset_generation/20250429-cellapp-data/20250429_HeLa-Rpe1-cellapp-data_A01_s12_Texas Red.tif
notebooks/tutorials/dataset_generation/20250429-cellapp-data/20250429_HeLa-Rpe1-cellapp-data_A01_s12_phs.tif
notebooks/tutorials/inference/inference.ipynb
notebooks/tutorials/training/config.yaml
notebooks/tutorials/training/training.py
notebooks/tutorials/training/training.sh
notebooks/tutorials/training/example_dataset/test/example_dataset_test.json
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