LICENSE
MANIFEST.in
NOTICE
README-pypi.md
README.md
environment.yml
pyproject.toml
packages/catgranule/CHANGELOG.md
packages/catgranule/README.md
packages/catgranule/pyproject.toml
packages/catgranule/scripts/_s4_numeric.py
packages/catgranule/scripts/bootstrap_web_benchmark.py
packages/catgranule/scripts/eval_routes.py
packages/catgranule/scripts/reproduce_distilled.py
packages/catgranule/src/catgranule/__init__.py
packages/catgranule/src/catgranule/_distill.py
packages/catgranule/src/catgranule/cli.py
packages/catgranule/src/catgranule/scoring.py
packages/catgranule/src/catgranule/surrogate.py
packages/catgranule/src/catgranule/weights.py
packages/catgranule/src/catgranule/weights/catgranule_distilled_weights.json
packages/catgranule/src/catgranule/weights/catgranule_paper_weights.json
packages/catgranule/src/catgranule/weights/catgranule_v1_weights.json
packages/catgranule/src/catgranule/weights/distilled_xgb_model.ubj
packages/catgranule/tests/test_catgranule_cli.py
packages/catgranule/tests/test_scoring.py
packages/catgranule/tests/fixtures/P35637.fasta
packages/catgranule/tests/fixtures/Q08211.fasta
scripts/check_no_proprietary.py
scripts/train_phasepred.py
scripts/validate_phasepred.py
src/phasepred/__init__.py
src/phasepred/cli.py
src/phasepred/data.py
src/phasepred/espritz.py
src/phasepred/features.py
src/phasepred/legacy_features.py
src/phasepred/models.py
src/phasepred/paper.py
src/phasepred/predictor.py
src/phasepred/sequences.py
src/phasepred/tool_features.py
src/phasepred/tool_paths.py
src/phasepred/tools.py
src/phasepred/training.py
src/phasepred/training_data.py
src/phasepred/updated_data.py
src/phasepred/validation.py
src/phasepred.egg-info/PKG-INFO
src/phasepred.egg-info/SOURCES.txt
src/phasepred.egg-info/dependency_links.txt
src/phasepred.egg-info/entry_points.txt
src/phasepred.egg-info/requires.txt
src/phasepred.egg-info/top_level.txt
src/phasepred/data/deepphase/LICENSE
src/phasepred/data/deepphase/NOTICE
src/phasepred/data/deepphase/deepphase_scores.tsv
src/phasepred/data/models/PdPS/8f_model_0.joblib
src/phasepred/data/models/PdPS/8f_model_1.joblib
src/phasepred/data/models/PdPS/8f_model_2.joblib
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src/phasepred/data/models/PdPS/8f_model_4.joblib
src/phasepred/data/models/PdPS/8f_model_5.joblib
src/phasepred/data/models/PdPS/8f_model_6.joblib
src/phasepred/data/models/PdPS/8f_model_7.joblib
src/phasepred/data/models/PdPS/8f_model_8.joblib
src/phasepred/data/models/PdPS/8f_model_9.joblib
src/phasepred/data/models/PdPS/manifest.json
src/phasepred/data/models/SaPS/8f_model_0.joblib
src/phasepred/data/models/SaPS/8f_model_1.joblib
src/phasepred/data/models/SaPS/8f_model_2.joblib
src/phasepred/data/models/SaPS/8f_model_3.joblib
src/phasepred/data/models/SaPS/8f_model_4.joblib
src/phasepred/data/models/SaPS/8f_model_5.joblib
src/phasepred/data/models/SaPS/8f_model_6.joblib
src/phasepred/data/models/SaPS/8f_model_7.joblib
src/phasepred/data/models/SaPS/8f_model_8.joblib
src/phasepred/data/models/SaPS/8f_model_9.joblib
src/phasepred/data/models/SaPS/manifest.json
src/phasepred/data/models/hPdPS/8f_model_0.joblib
src/phasepred/data/models/hPdPS/8f_model_1.joblib
src/phasepred/data/models/hPdPS/8f_model_2.joblib
src/phasepred/data/models/hPdPS/8f_model_3.joblib
src/phasepred/data/models/hPdPS/8f_model_4.joblib
src/phasepred/data/models/hPdPS/8f_model_5.joblib
src/phasepred/data/models/hPdPS/8f_model_6.joblib
src/phasepred/data/models/hPdPS/8f_model_7.joblib
src/phasepred/data/models/hPdPS/8f_model_8.joblib
src/phasepred/data/models/hPdPS/8f_model_9.joblib
src/phasepred/data/models/hPdPS/manifest.json
src/phasepred/data/models/hSaPS/8f_model_0.joblib
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src/phasepred/data/models/hSaPS/8f_model_3.joblib
src/phasepred/data/models/hSaPS/8f_model_4.joblib
src/phasepred/data/models/hSaPS/8f_model_5.joblib
src/phasepred/data/models/hSaPS/8f_model_6.joblib
src/phasepred/data/models/hSaPS/8f_model_7.joblib
src/phasepred/data/models/hSaPS/8f_model_8.joblib
src/phasepred/data/models/hSaPS/8f_model_9.joblib
src/phasepred/data/models/hSaPS/manifest.json
src/phasepred/data/tools/README.md
src/phasepred/data/tools/DeepCoil/README.md
src/phasepred/data/tools/DeepCoil/install.sh
src/phasepred/data/tools/DeepCoil/manifest.toml
src/phasepred/data/tools/DeepCoil/run
src/phasepred/data/tools/ESpritz/README.md
src/phasepred/data/tools/ESpritz/install.sh
src/phasepred/data/tools/ESpritz/manifest.toml
src/phasepred/data/tools/ESpritz/run
src/phasepred/data/tools/LocalCIDER/README.md
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src/phasepred/data/tools/LocalCIDER/manifest.toml
src/phasepred/data/tools/LocalCIDER/run
src/phasepred/data/tools/PLAAC/README.md
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src/phasepred/data/tools/PLAAC/manifest.toml
src/phasepred/data/tools/PLAAC/run
src/phasepred/data/tools/PLAAC/plaac-master/web/bin/plaac.jar
src/phasepred/data/tools/PScore/README.md
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src/phasepred/data/tools/PScore/manifest.toml
src/phasepred/data/tools/PScore/run
src/phasepred/data/tools/PScore/SourceCodeS2/README.txt
src/phasepred/data/tools/PScore/SourceCodeS2/elife_phase_separation_predictor.py
src/phasepred/data/tools/SEG/README.md
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src/phasepred/data/tools/SEG/manifest.toml
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src/phasepred/data/tools/SEG/seg
tests/test_check_tools_table.py
tests/test_cli.py
tests/test_cwd.py
tests/test_data_resolution.py
tests/test_demo_scripts.py
tests/test_features.py
tests/test_golden_fixtures.py
tests/test_models.py
tests/test_paper.py
tests/test_sequences.py
tests/test_tool_contract_drift.py
tests/test_train_phasepred.py
tests/test_training.py
tests/test_training_data.py
tests/test_training_data_integrity.py
tests/test_training_data_real.py
tests/test_v2022.py
tests/test_validation.py
tests/test_version_consistency.py