# pyROSE
A Python Package for Rank Ordering of Super-Enhancers

## Introduction
pyROSE is an easy to install and run python library of ROSE (Rank Ordering of Super-Enhancers) 
http://younglab.wi.mit.edu/super_enhancer_code.html

If you use this library for your analysis please cite the follwoing papers: 

* Warren A. Whyte, David A. Orlando, Denes Hnisz, Brian J. Abraham, Charles Y. Lin, Michael H. Kagey, Peter B. Rahl, Tong Ihn Lee and Richard A. Young, Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes, Cell 153, 307-319, April 11, 2013


* Jakob Lovén, Heather A. Hoke, Charles Y. Lin, Ashley Lau, David A. Orlando, Christopher R. Vakoc, James E. Bradner, Tong Ihn Lee, and Richard A. Young, Selective Inhibition of Tumor Oncogenes by Disruption of Super-enhancers, Cell 153, 320-334, April 11, 2013

## How to install

Instal from PyPi

	 pip install pyrose

Install from the source

	 python setup.py install

## How to run
	pyrose --help
