13/06/2024

* junier_data/: Experimental data and data reproduced using biophysical model of paper:
  Assessing in vivo the impact of gene context on transcription through DNA supercoiling
  With authors: Ihab Boulas, Lisa Bruno, Sylvie Rimsky, Olivier Espeli, Ivan Junier, Olivier Rivoire

* promoter_responses/: From that paper, I calculated opening curves (energy required for melting) using the SIST code.

* torcphys/: Results using TORCPhysics models and parametrizaiton, using same system conditions (sizes)