AUTHORS.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.py
FishTaco.egg-info/PKG-INFO
FishTaco.egg-info/SOURCES.txt
FishTaco.egg-info/dependency_links.txt
FishTaco.egg-info/requires.txt
FishTaco.egg-info/top_level.txt
fishtaco/__init__.py
fishtaco/compute_contribution_to_DA.py
fishtaco/compute_differential_abundance.py
fishtaco/compute_pathway_abundance.py
fishtaco/compute_shapley_value_from_subsets.py
fishtaco/learn_non_neg_elastic_net_with_prior.py
fishtaco/BAK/compute_contribution_to_DA.back_01_21_2015
fishtaco/BAK/compute_contribution_to_DA.back_07_14_2014
fishtaco/data/KOvsMODULE_BACTERIAL_KEGG_2013_07_15
fishtaco/data/KOvsMODULE_BACTERIAL_KEGG_2013_07_15.tab
fishtaco/data/KOvsPATHWAY_BACTERIAL_KEGG_2013_07_15
fishtaco/data/KOvsPATHWAY_BACTERIAL_KEGG_2013_07_15.tab
fishtaco/examples/KO_vs_SAMPLE_MUSiCC.tab
fishtaco/examples/METAPHLAN_taxa_vs_KO_only_K00001.tab
fishtaco/examples/METAPHLAN_taxa_vs_KO_only_K00001_K00054.tab
fishtaco/examples/METAPHLAN_taxa_vs_SAMPLE_for_K00001.tab
fishtaco/examples/PATHWAY_vs_SAMPLE_MUSiCC.tab
fishtaco/examples/SAMPLE_vs_CLASS.tab
fishtaco/examples/WGS_KO_vs_SAMPLE_MUSiCC_only_K00001.tab
fishtaco/examples/WGS_KO_vs_SAMPLE_MUSiCC_only_K00001_K00054.tab
fishtaco/examples/output/fishtaco_out_FDR_correction_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_shapley_orderings_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_de_novo_inf_main_output_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_filtering_by_function_list_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_shapley_orderings_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_no_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_no_inf_main_output_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_predict_function_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_DA_function_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_DA_taxa_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_mean_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_median_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_original_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_DA_value_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_predicted_function_agreement_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_residual_function_abundance_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_run_log_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_shapley_orderings_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_std_stat_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_learned_copy_num_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_permuted_shapley_orderings.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_STAT_taxa_learning_rsqr_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_prior_based_inf_main_output_SCORE_wilcoxon_ASSESSMENT_single_taxa.tab
fishtaco/examples/output/fishtaco_out_shapley_STAT_taxa_contributions_SCORE_wilcoxon_ASSESSMENT_multi_taxa.tab
scripts/run_fishtaco.py
tests/test_fishtaco.py