.gitignore
.travis.yml
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
README.md
clean.sh
codecov.yml
coverage.xml
readthedocs.yml
setup.cfg
setup.py
NeuNorm/__init__.py
NeuNorm/_utilities.py
NeuNorm/exporter.py
NeuNorm/loader.py
NeuNorm/normalization.py
NeuNorm/roi.py
NeuNorm.egg-info/PKG-INFO
NeuNorm.egg-info/SOURCES.txt
NeuNorm.egg-info/dependency_links.txt
NeuNorm.egg-info/requires.txt
NeuNorm.egg-info/top_level.txt
conda-recipes/conda_build_config.yaml
conda-recipes/meta.yaml
data/df/DC0000.tif
data/df/DC0001.tif
data/df/DC0002.tif
data/ob/0001.tif
data/ob/0002.tif
data/ob/0003.tif
data/ob/0004.tif
data/ob/0005.tif
data/ob/0006.tif
data/ob/0007.tif
data/ob/0008.tif
data/ob/0009.tif
data/ob/0010.tif
data/ob/0011.tif
data/ob/0012.tif
data/ob/0013.tif
data/ob/0014.tif
data/ob/0015.tif
data/sample/0002.tif
data/sample/0003.tif
data/sample/0004.tif
data/sample/0005.tif
data/sample/0006.tif
data/sample/0007.tif
data/sample/0008.tif
data/sample/0009.tif
data/sample/0010.tif
data/sample/0011.tif
data/sample/0012.tif
data/sample/0013.tif
data/sample/0014.tif
data/sample/0015.tif
documentation/Makefile
documentation/readthedocs-environment.yml
documentation/build/.buildinfo
documentation/build/.nojekyll
documentation/build/.doctrees/cropping_data.doctree
documentation/build/.doctrees/dark_field_correction.doctree
documentation/build/.doctrees/environment.pickle
documentation/build/.doctrees/export_data.doctree
documentation/build/.doctrees/index.doctree
documentation/build/.doctrees/installation.doctree
documentation/build/.doctrees/loading.doctree
documentation/build/.doctrees/normalization.doctree
documentation/build/.doctrees/notebook.doctree
documentation/build/.doctrees/retrieve_normalized_data.doctree
documentation/build/.doctrees/tutorial_normalization_with_fewer_ob_than_sample.doctree
documentation/build/.doctrees/tutorial_using_array_input.doctree
documentation/build/.doctrees/tutorial_using_folder_input.doctree
documentation/build/doctrees/cropping_data.doctree
documentation/build/doctrees/dark_field_correction.doctree
documentation/build/doctrees/environment.pickle
documentation/build/doctrees/export_data.doctree
documentation/build/doctrees/index.doctree
documentation/build/doctrees/installation.doctree
documentation/build/doctrees/loading.doctree
documentation/build/doctrees/normalization.doctree
documentation/build/doctrees/notebook.doctree
documentation/build/doctrees/retrieve_normalized_data.doctree
documentation/build/doctrees/tutorial_normalization_with_fewer_ob_than_sample.doctree
documentation/build/doctrees/tutorial_using_array_input.doctree
documentation/build/doctrees/tutorial_using_folder_input.doctree
documentation/build/html/.buildinfo
documentation/build/html/.nojekyll
documentation/build/html/cropping_data.html
documentation/build/html/dark_field_correction.html
documentation/build/html/export_data.html
documentation/build/html/genindex.html
documentation/build/html/index.html
documentation/build/html/installation.html
documentation/build/html/loading.html
documentation/build/html/normalization.html
documentation/build/html/notebook.html
documentation/build/html/objects.inv
documentation/build/html/retrieve_normalized_data.html
documentation/build/html/search.html
documentation/build/html/searchindex.js
documentation/build/html/tutorial_normalization_with_fewer_ob_than_sample.html
documentation/build/html/tutorial_using_array_input.html
documentation/build/html/tutorial_using_folder_input.html
documentation/build/html/_images/progress_bar_loading.png
documentation/build/html/_images/progress_bar_normalization.png
documentation/build/html/_sources/cropping_data.rst.txt
documentation/build/html/_sources/dark_field_correction.rst.txt
documentation/build/html/_sources/export_data.rst.txt
documentation/build/html/_sources/index.rst.txt
documentation/build/html/_sources/installation.rst.txt
documentation/build/html/_sources/loading.rst.txt
documentation/build/html/_sources/normalization.rst.txt
documentation/build/html/_sources/notebook.rst.txt
documentation/build/html/_sources/retrieve_normalized_data.rst.txt
documentation/build/html/_sources/tutorial_normalization_with_fewer_ob_than_sample.ipynb.txt
documentation/build/html/_sources/tutorial_using_array_input.ipynb.txt
documentation/build/html/_sources/tutorial_using_folder_input.ipynb.txt
documentation/build/html/_static/ajax-loader.gif
documentation/build/html/_static/basic.css
documentation/build/html/_static/comment-bright.png
documentation/build/html/_static/comment-close.png
documentation/build/html/_static/comment.png
documentation/build/html/_static/doctools.js
documentation/build/html/_static/down-pressed.png
documentation/build/html/_static/down.png
documentation/build/html/_static/file.png
documentation/build/html/_static/jquery-3.1.0.js
documentation/build/html/_static/jquery.js
documentation/build/html/_static/minus.png
documentation/build/html/_static/normalization_equation.png
documentation/build/html/_static/normalization_principle.png
documentation/build/html/_static/plus.png
documentation/build/html/_static/progress_bar_loading.png
documentation/build/html/_static/progress_bar_normalization.png
documentation/build/html/_static/pygments.css
documentation/build/html/_static/searchtools.js
documentation/build/html/_static/underscore-1.3.1.js
documentation/build/html/_static/underscore.js
documentation/build/html/_static/up-pressed.png
documentation/build/html/_static/up.png
documentation/build/html/_static/websupport.js
documentation/build/html/_static/css/badge_only.css
documentation/build/html/_static/css/theme.css
documentation/build/html/_static/fonts/Inconsolata-Bold.ttf
documentation/build/html/_static/fonts/Inconsolata-Regular.ttf
documentation/build/html/_static/fonts/Lato-Bold.ttf
documentation/build/html/_static/fonts/Lato-Regular.ttf
documentation/build/html/_static/fonts/RobotoSlab-Bold.ttf
documentation/build/html/_static/fonts/RobotoSlab-Regular.ttf
documentation/build/html/_static/fonts/fontawesome-webfont.eot
documentation/build/html/_static/fonts/fontawesome-webfont.svg
documentation/build/html/_static/fonts/fontawesome-webfont.ttf
documentation/build/html/_static/fonts/fontawesome-webfont.woff
documentation/build/html/_static/js/modernizr.min.js
documentation/build/html/_static/js/theme.js
documentation/source/conf.py
documentation/source/cropping_data.rst
documentation/source/dark_field_correction.rst
documentation/source/export_data.rst
documentation/source/index.rst
documentation/source/installation.rst
documentation/source/loading.rst
documentation/source/normalization.rst
documentation/source/notebook.rst
documentation/source/retrieve_normalized_data.rst
documentation/source/tutorial_normalization_with_fewer_ob_than_sample.ipynb
documentation/source/tutorial_using_array_input.ipynb
documentation/source/tutorial_using_folder_input.ipynb
documentation/source/_static/normalization_equation.png
documentation/source/_static/normalization_principle.png
documentation/source/_static/progress_bar_loading.png
documentation/source/_static/progress_bar_normalization.png
notebooks/debugging_multi_roi_bug.ipynb
notebooks/ipts-16259.ipynb
notebooks/notebook_display_with_time_estimation.ipynb
notebooks/testing_new_auto_gamma_filtering.ipynb
notebooks/tutorial_normalization_with_fewer_ob_than_sample.ipynb
notebooks/tutorial_normalization_with_fewer_ob_than_sample_MAYBE_BUG.ipynb
notebooks/tutorial_using_array_input.ipynb
notebooks/tutorial_using_array_input_and_export_array.ipynb
notebooks/tutorial_using_array_input_and_several_roi.ipynb
notebooks/tutorial_using_folder_input.ipynb
paper/paper.bib
paper/paper.md
tests/NeuNorm/cropping_test.py
tests/NeuNorm/export_test.py
tests/NeuNorm/loading_test.py
tests/NeuNorm/normalizing_test.py
tests/NeuNorm/roi_test.py
tests/NeuNorm/utilities_test.py
tests/data/format_not_suppored.txt
tests/data/ob001.fits
tests/data/different_format/df001_4_by_4.tif
tests/data/different_format/image001_4_by_4.tif
tests/data/different_format/image001_with_gamma.tif
tests/data/different_format/not_supported_file.fake
tests/data/different_format/ob001_4_by_4.tif
tests/data/fits/df/df001.fits
tests/data/fits/ob/ob001.fits
tests/data/fits/ob/ob002.fits
tests/data/fits/ob/ob003.fits
tests/data/fits/sample/image001.fits
tests/data/fits/sample/image002.fits
tests/data/fits/sample/image003.fits
tests/data/fits/test_roi/ob.fits
tests/data/fits/test_roi/sample.fits
tests/data/fits/tof/ob/ob_001.fits
tests/data/fits/tof/ob/ob_002.fits
tests/data/fits/tof/ob/ob_003.fits
tests/data/fits/tof/sample/sample_001.fits
tests/data/fits/tof/sample/sample_002.fits
tests/data/fits/tof/sample/sample_003.fits
tests/data/hdf5/dump_file.hdf5
tests/data/tif/df/df001.tif
tests/data/tif/df/df002.tif
tests/data/tif/df/df003.tif
tests/data/tif/ob/ob001.tif
tests/data/tif/ob/ob002.tif
tests/data/tif/ob/ob003.tif
tests/data/tif/sample/image001.tif
tests/data/tif/sample/image002.tif
tests/data/tif/sample/image003.tif
tests/data/tif/sample_with_gamma/image001.tif
tests/data/tif/special_ob/ob_0001_2rois.tiff
tests/data/tif/special_sample/image_0001_2rois.tiff
tests/data/tif/special_sample/image_0001_roi_no_ob.tiff
tests/data/tif/tof/ob/ob_01.tiff
tests/data/tif/tof/ob/ob_02.tiff
tests/data/tif/tof/ob/ob_03.tiff
tests/data/tif/tof/sample/tof_01.tiff
tests/data/tif/tof/sample/tof_02.tiff
tests/data/tif/tof/sample/tof_03.tiff