.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
changelog.md
pyproject.toml
tox.ini
tree-ring-analyzer.code-workspace
.github/workflows/test_and_deploy.yml
.napari-hub/DESCRIPTION.md
src/tree_ring_analyzer/__init__.py
src/tree_ring_analyzer/batch_segment_from_distance_map.ijm
src/tree_ring_analyzer/batch_segment_from_dm_morpho_small.py
src/tree_ring_analyzer/custom_loss.py
src/tree_ring_analyzer/find_active_contours.py
src/tree_ring_analyzer/find_endpoints.py
src/tree_ring_analyzer/napari.yaml
src/tree_ring_analyzer/preprocessing.py
src/tree_ring_analyzer/rename-files.py
src/tree_ring_analyzer/segmentation.py
src/tree_ring_analyzer/segmentation_from_distanceMap.ijm
src/tree_ring_analyzer/test.py
src/tree_ring_analyzer/test_pith.py
src/tree_ring_analyzer/test_segmentation.py
src/tree_ring_analyzer/training.py
src/tree_ring_analyzer/tree_pith.ipynb
src/tree_ring_analyzer/tree_rings_dis.ipynb
src/tree_ring_analyzer.egg-info/PKG-INFO
src/tree_ring_analyzer.egg-info/SOURCES.txt
src/tree_ring_analyzer.egg-info/dependency_links.txt
src/tree_ring_analyzer.egg-info/requires.txt
src/tree_ring_analyzer.egg-info/top_level.txt
src/tree_ring_analyzer/_tests/__init__.py
src/tree_ring_analyzer/_tests/test_analyzer.py
src/tree_ring_analyzer/_tests/test_model.py
src/tree_ring_analyzer/_tests/test_tiles.py
src/tree_ring_analyzer/_tests/utils.py
src/tree_ring_analyzer/dl/__init__.py
src/tree_ring_analyzer/dl/losses.py
src/tree_ring_analyzer/dl/model.py
src/tree_ring_analyzer/dl/postprocessing.py
src/tree_ring_analyzer/dl/preprocessing.py
src/tree_ring_analyzer/dl/train.py
src/tree_ring_analyzer/dl/unet2d2c_training.py
src/tree_ring_analyzer/dl/unet2d_training.py
src/tree_ring_analyzer/experimental/classify_microglia.py
src/tree_ring_analyzer/experimental/dump.py
src/tree_ring_analyzer/experimental/graph_explo.py
src/tree_ring_analyzer/experimental/segment_microglia.py
src/tree_ring_analyzer/experimental/tiles.py
src/tree_ring_analyzer/tiles/__init__.py
src/tree_ring_analyzer/tiles/patch.py
src/tree_ring_analyzer/tiles/plot.py
src/tree_ring_analyzer/tiles/tiler.py