pyyaml>=6.0
biopython>=1.80
numpy>=1.20
scipy>=1.8
matplotlib>=3.5
defusedxml>=0.7

[dev]
pytest==9.1.1
pytest-cov==7.1.0
flake8==7.4.1
black==26.5.1
mypy==2.3.1
types-PyYAML==6.0.12.20260906

[xml]
lxml>=4.9
