Metadata-Version: 2.1
Name: eds-tools
Version: 0.1.0
Summary: EDSTools: designed to combined variant calls from peaked data with the reference genome. Returns the genomic sequence of the allele most present in the peak.
Author: Simone G. Riva, Edward Sanders
Author-email: simo.riva15@gmail.com
Project-URL: Bug Tracker, https://github.com/Genome-Function-Initiative-Oxford/EdTools/issues
Project-URL: Source, https://github.com/Genome-Function-Initiative-Oxford/EdTools
Requires-Python: >=3.9.10
Description-Content-Type: text/markdown
License-File: LICENSE

# EDSTools -- EvolvedDevelopmentSequenceTools

BEDTools style repository for passing VCF/BED files.

Designed to combined variant calls from peaked data with the reference genome. Returns the genomic sequence of the allele most present in the peak.

Example Usage:

```
import eds_tools

py_eds_tool = eds_tools.EdsTool("/<path>/analysis_regions.txt")

py_eds_tool = py_eds_tool.sequence(
    fi= "/<path>/genome.fa",
    vcf="/<path>/gatk-snp-indel.vcf.gz"
)
sequences = py_eds_tool.sequences
```

To run the unittests please run:

```
cd eds_tools
python -m unittest discover
```
