COPYING
README.md
pyproject.toml
./plasmid_typer/__init__.py
./plasmid_typer/plasmid_typer.py
./plasmid_typer/database/infos_cluster.tsv
./plasmid_typer/database/markers_cluster_specific_plasmids_atleast3.faa
./plasmid_typer/database/markers_thresholds_database.tsv
./plasmid_typer/scriptes/__init__.py
./plasmid_typer/scriptes/config.py
./plasmid_typer/scriptes/main.py
./plasmid_typer/scriptes/mmseqs2.py
./plasmid_typer/scriptes/mmseqs2_utils.py
./plasmid_typer/scriptes/translate.py
./plasmid_typer/scriptes/AI/__init__.py
./plasmid_typer/scriptes/AI/type_plasmids.py
./plasmid_typer/scriptes/AI/utils.py
plasmid_typer/__init__.py
plasmid_typer/plasmid_typer.py
plasmid_typer.egg-info/PKG-INFO
plasmid_typer.egg-info/SOURCES.txt
plasmid_typer.egg-info/dependency_links.txt
plasmid_typer.egg-info/entry_points.txt
plasmid_typer.egg-info/requires.txt
plasmid_typer.egg-info/top_level.txt
plasmid_typer/database/infos_cluster.tsv
plasmid_typer/database/markers_cluster_specific_plasmids_atleast3.faa
plasmid_typer/database/markers_thresholds_database.tsv
plasmid_typer/scriptes/__init__.py
plasmid_typer/scriptes/config.py
plasmid_typer/scriptes/main.py
plasmid_typer/scriptes/mmseqs2.py
plasmid_typer/scriptes/mmseqs2_utils.py
plasmid_typer/scriptes/translate.py
plasmid_typer/scriptes/AI/__init__.py
plasmid_typer/scriptes/AI/type_plasmids.py
plasmid_typer/scriptes/AI/utils.py