runi.ac.il hadar.pur@post.runi.ac.il {{today_date}}
Input {{ headings.target_sequence }} {{ headings.unwanted_patterns }} {{ headings.unwanted_pattern_occurrences }}
Elimination {{ headings.elimination_process }}
Results {{ headings.dna_sequences_difference }} {{ headings.detailed_cost_contributions }} {{ headings.detailed_cost_substitutions }} {{ headings.optimized_sequence }}

Input

{{ headings.target_sequence }}:

{% if coding_idx is not none and coding_idx | length > 0 %}

A coding region was identified in the target sequence at positions {{coding_idx}}:

{{ highlight_input | safe }}
{% else %}

{{input}}

{% endif %}

{{ headings.unwanted_patterns }}:

{{patterns}}

{% if unwanted_patterns_occurrences %}

{{ headings.unwanted_pattern_occurrences }}:

{% for row in unwanted_patterns_occurrences %} {% endfor %}
Pattern Count Positions
{{ row.Pattern }} {{ row.Count }} {% if row.Positions %} {% for token in row.Positions %} {% set bounds = token.split('-') %} {{ token }}{% if not loop.last %}{% endif %} {% endfor %} {% else %} — {% endif %}
{% endif %}

Elimination

{{ headings.elimination_process }}

{{elimination_process_description}}

Non-Coding regions:

{{non_coding_region_cost_description}}

Coding regions:

{{coding_region_cost_description}}

Results

{{ headings.dna_sequences_difference }}:

{{index_seq_str}}
{{marked_input_seq}}
{{marked_optimized_seq}}

{{ headings.detailed_cost_contributions }}:

{% for change in cost_contribution %} {% endfor %}
Position Original Optimized Cost
{{ change.Position }} {{ change.Original }} {{ change.Optimized }} {{ change.Cost }}

{{ headings.detailed_cost_substitutions }}:

{% for change in cost_substitution %} {% endfor %}
Position Original Optimized Cost
{{ change.Position }} {{ change.Original }} {{ change.Optimized }} {{ change.Cost }}

{{ headings.optimized_sequence }}:

{{ highlight_optimized_selected | safe }}