.gitignore
README.md
setup.py
src/anutils/__init__.py
src/anutils/exceptions.py
src/anutils/utils.py
src/anutils.egg-info/PKG-INFO
src/anutils.egg-info/SOURCES.txt
src/anutils.egg-info/dependency_links.txt
src/anutils.egg-info/requires.txt
src/anutils.egg-info/top_level.txt
src/anutils/mlutils/__init__.py
src/anutils/mlutils/mlutils.py
src/anutils/scutils/__init__.py
src/anutils/scutils/annotation.py
src/anutils/scutils/plotting.py
src/anutils/scutils/preprocessing.py
src/anutils/scutils/settings.py
src/anutils/scutils/utils.py
src/anutils/scutils/data/__init__.py
src/anutils/scutils/data/data.py
src/anutils/scutils/data/h5ad2mtx.py
src/anutils/scutils/data/mtx2rds.R
src/anutils/scutils/external/__init__.py
src/anutils/scutils/external/integration/__init__.py
src/anutils/scutils/external/integration/harmony.py
src/anutils/scutils/external/integration/harmony_matrix.R
src/anutils/scutils/external/integration/integration.py
src/anutils/scutils/external/integration/scalex.py
src/anutils/scutils/external/integration/scvi.py
src/anutils/scutils/external/integration/seurat.R
src/anutils/scutils/external/integration/seurat.py
src/anutils/scutils/resources/gene_sets/regev_lab_cell_cycle_genes.txt
src/anutils/scutils/sc_cuda/__init__.py
src/anutils/scutils/sc_cuda/rapids_scanpy_funcs.py
src/anutils/scutils/sc_cuda/scanpy_cuda.py
src/anutils/scutils/sc_cuda/scib_cuda.py
tests/run_tests.py