Metadata-Version: 2.1
Name: astk
Version: 0.1.3
Summary: A comprehensive toolkit for alternative splicing analysis
Home-page: https://github.com/huang-sh/astk/
Author: huangsh
Author-email: hsh-me@outlook.com
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: click (>=8.0.0)
Requires-Dist: pandas (>=1.3.0)
Requires-Dist: matplotlib (>=3.4.0)
Requires-Dist: scikit-learn (>=0.24.0)
Requires-Dist: statsmodels (>=0.12.0)
Requires-Dist: gseapy (==0.10.8)
Requires-Dist: statannotations
Requires-Dist: seaborn
Requires-Dist: tqdm
Requires-Dist: pysam
Requires-Dist: pyfaidx
Requires-Dist: nease
Requires-Dist: biopython
Requires-Dist: pyecharts
Requires-Dist: click-option-group

What is ASTK?
===============

**ASTK** is a command-line software for comprehensive alternative splicing analysis including:
- characterizing distribution and expression patterns of alternative splicing events
- systematically analyzing functional effects of AS events at the gene- and exon-level respectively
- dissecting out splicing-associated sequence features and epigenetic marks
- inferring the splicing regulatory code for each type of AS. 

<img src='https://huang-sh.github.io/astk-doc/static/img/workflow.png' alt="workflow.png"></img>

Documentation
===============

The documentation for ***ASTK*** is available on [astk-doc](https://huang-sh.github.io/astk-doc/)


Contact
===============
If you have any problem, contact me at hsh-me@outlook.com
