MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
carvemegut/__init__.py
carvemegut/config.cfg
carvemegut.egg-info/PKG-INFO
carvemegut.egg-info/SOURCES.txt
carvemegut.egg-info/dependency_links.txt
carvemegut.egg-info/entry_points.txt
carvemegut.egg-info/requires.txt
carvemegut.egg-info/top_level.txt
carvemegut/cli/__init__.py
carvemegut/cli/benchmark.py
carvemegut/cli/benchmark_cdiff.py
carvemegut/cli/benchmark_new.py
carvemegut/cli/build_universe.py
carvemegut/cli/carve.py
carvemegut/cli/carve_old.py
carvemegut/cli/curate_universe.py
carvemegut/cli/gapfill.py
carvemegut/cli/merge_community.py
carvemegut/cli/original_carve.py
carvemegut/reconstruction/__init__.py
carvemegut/reconstruction/benchmark.py
carvemegut/reconstruction/carving.py
carvemegut/reconstruction/diamond.py
carvemegut/reconstruction/eggnog.py
carvemegut/reconstruction/gapfilling.py
carvemegut/reconstruction/ncbi_download.py
carvemegut/reconstruction/scoring.py
carvemegut/reconstruction/utils.py
carvemegut/universe/__init__.py
carvemegut/universe/annotate.py
carvemegut/universe/curation.py
carvemegut/universe/download.py