MANIFEST.in
README.md
TUTORIAL.md
pyproject.toml
merge_cli/__init__.py
merge_cli/__main__.py
merge_cli/api.py
merge_cli/cli.py
merge_cli/config.py
merge_cli/local_engine.py
merge_cli/mcp_install.py
merge_cli/mcp_server.py
merge_cli/output.py
merge_cli/skill_install.py
merge_cli.egg-info/PKG-INFO
merge_cli.egg-info/SOURCES.txt
merge_cli.egg-info/dependency_links.txt
merge_cli.egg-info/entry_points.txt
merge_cli.egg-info/requires.txt
merge_cli.egg-info/top_level.txt
merge_cli/data/__init__.py
merge_cli/data/models/.gitkeep
merge_cli/data/models/MERGE_coding.pkl
merge_cli/data/models/MERGE_noncoding.pkl
merge_cli/data/models/MERGE_nonsnv.pkl
merge_cli/data/models/MERGE_splicing.pkl
merge_cli/data/models/MODEL_CARD.md
merge_cli/data/models/__init__.py
merge_cli/data/models/ensemble_predict.py
merge_cli/data/skills/merge-variant-pathogenicity/SKILL.md
tests/test_answer_variant.py
tests/test_ep_module_isolation.py
tests/test_evo2_polling.py
tests/test_mcp_install.py
tests/test_semicolon_features.py
tests/test_sklearn_compat.py
tests/test_smoke_v38.py
tests/test_time_budget.py