LICENSE
MANIFEST.in
README.md
setup.py
beditor/__init__.py
beditor/beditor.ipynb
beditor/run.py
beditor/workflow.ipynb
beditor.egg-info/PKG-INFO
beditor.egg-info/SOURCES.txt
beditor.egg-info/dependency_links.txt
beditor.egg-info/entry_points.txt
beditor.egg-info/requires.txt
beditor.egg-info/top_level.txt
beditor/bwa/Makefile
beditor/bwa/QSufSort.c
beditor/bwa/QSufSort.h
beditor/bwa/bamlite.c
beditor/bwa/bamlite.h
beditor/bwa/bntseq.c
beditor/bwa/bntseq.h
beditor/bwa/bwa.1
beditor/bwa/bwa.c
beditor/bwa/bwa.h
beditor/bwa/bwamem.c
beditor/bwa/bwamem.h
beditor/bwa/bwamem_extra.c
beditor/bwa/bwamem_pair.c
beditor/bwa/bwape.c
beditor/bwa/bwase.c
beditor/bwa/bwase.h
beditor/bwa/bwaseqio.c
beditor/bwa/bwashm.c
beditor/bwa/bwt.c
beditor/bwa/bwt.h
beditor/bwa/bwt_gen.c
beditor/bwa/bwt_lite.c
beditor/bwa/bwt_lite.h
beditor/bwa/bwtaln.c
beditor/bwa/bwtaln.h
beditor/bwa/bwtgap.c
beditor/bwa/bwtgap.h
beditor/bwa/bwtindex.c
beditor/bwa/bwtsw2.h
beditor/bwa/bwtsw2_aux.c
beditor/bwa/bwtsw2_chain.c
beditor/bwa/bwtsw2_core.c
beditor/bwa/bwtsw2_main.c
beditor/bwa/bwtsw2_pair.c
beditor/bwa/code_of_conduct.md
beditor/bwa/example.c
beditor/bwa/fastmap.c
beditor/bwa/is.c
beditor/bwa/kbtree.h
beditor/bwa/khash.h
beditor/bwa/kopen.c
beditor/bwa/kseq.h
beditor/bwa/ksort.h
beditor/bwa/kstring.c
beditor/bwa/kstring.h
beditor/bwa/ksw.c
beditor/bwa/ksw.h
beditor/bwa/kthread.c
beditor/bwa/kvec.h
beditor/bwa/main.c
beditor/bwa/malloc_wrap.c
beditor/bwa/malloc_wrap.h
beditor/bwa/maxk.c
beditor/bwa/neon_sse.h
beditor/bwa/pemerge.c
beditor/bwa/qualfa2fq.pl
beditor/bwa/rle.c
beditor/bwa/rle.h
beditor/bwa/rope.c
beditor/bwa/rope.h
beditor/bwa/scalar_sse.h
beditor/bwa/utils.c
beditor/bwa/utils.h
beditor/bwa/xa2multi.pl
beditor/bwa/bwakit/README.md
beditor/bwa/bwakit/bwa-postalt.js
beditor/bwa/bwakit/run-HLA
beditor/bwa/bwakit/run-bwamem
beditor/bwa/bwakit/run-gen-ref
beditor/bwa/bwakit/typeHLA-selctg.js
beditor/bwa/bwakit/typeHLA.js
beditor/bwa/bwakit/typeHLA.sh
beditor/data/methods.tsv
beditor/lib/__init__.py
beditor/lib/get_mutations.py
beditor/lib/get_scores.py
beditor/lib/get_specificity.py
beditor/lib/io.py
beditor/lib/make_guides.py
beditor/lib/methods.py
beditor/lib/utils.py
beditor/lib/viz.py
tests/test_run.py